Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq241 116 4e-21 seq520 96.9 3e-15 seq365 96.9 3e-15 seq2483 84.2 2e-11 >seq241 Length=74255 Score = 116 bits (128), Expect = 4e-21 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 ||| ||||||| |||| || | |||||| |||||| | ||||| || || |||||| Sbjct 56742 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 56801 Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283 ||||| ||||| | || |||| ||| || || | | |||| | ||| || || Sbjct 56802 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 56861 Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343 | |||||||||| ||||||||| ||||||||| ||||| || | |||||| |||| Sbjct 56862 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 56921 Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403 | || || |||| | | |||| || ||| |||| ||| || | | ||||||| Sbjct 56922 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCA 56981 Query 154404 TCGGCGAGCCCTTG 154417 || || | ||||| Sbjct 56982 TCCGCCAATCCTTG 56995 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 ||||| |||||||||| ||||| || ||| || || ||||| |||| ||||||| Sbjct 57353 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 57412 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 ||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| | Sbjct 57413 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 57472 Query 154746 TCAATAATTG 154755 |||||||||| Sbjct 57473 TCAATAATTG 57482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873 |||||| | |||||||||||| | ||| |||| ||| || ||||| | || Sbjct 57601 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGG 57660 Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933 ||||||| |||||| | ||| || | ||| ||||| || | ||| || | ||| Sbjct 57661 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 57720 Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993 | || || |||||||| || || || ||||| |||| || ||| ||| | Sbjct 57721 GAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 57779 Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047 ||| ||||||| ||||||| |||||||| || || ||||| || || | ||| || Sbjct 57780 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 57834 >seq520 Length=13491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 9185 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9244 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||||| || | || |||||||| | | Sbjct 9245 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 9304 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 9305 GTCTTAACGAAAATTTGCATT 9325 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 10035 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10094 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||||| || | || |||||||| | | Sbjct 10095 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 10154 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 10155 GTCTTAACGAAAATTTGCATT 10175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 9469 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9528 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||||| || | || ||||| || | | Sbjct 9529 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 9588 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 9589 GTCTTAACGAAAATTTGCATT 9609 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 10319 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10378 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||||| || | || ||||| || | | Sbjct 10379 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 10438 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 10439 GTCTTAACGAAAATTTGCATT 10459 >seq365 Length=37953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||||||||| ||||| ||||| Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||| | || | || |||||||| | | Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17536 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 17537 GTCTTAACGAAAATTTGCATT 17557 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 22299 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22358 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||||| || | || |||||||| | | Sbjct 22359 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 22418 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 22419 GTCTTAACAAAAATTTGCATT 22439 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | || || || || || ||||||||||| || || |||||||| Sbjct 28381 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 28440 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | ||||||| | || ||||| | || | || |||||||| Sbjct 28441 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 28500 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||||||||||||| Sbjct 28501 AAGAGTCTTAACGAAAATTTGCATT 28525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 27533 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 27592 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | ||||| || | || | ||| ||||| || | Sbjct 27593 TTTACATTCTCTATTGTATCAGATGGTTCCACCTCCAATGTGATGGTTTTGCCAGTGAGG 27652 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 27653 GTCTTGACAAAAATTTGCATT 27673 >seq2483 Length=432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||| || ||| |||| | || || || || || |||||||| ||||| ||||| Sbjct 243 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 184 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| || ||| || | ||||||| | || ||||| | ||||| || || Sbjct 183 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 124 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | || || ||||||||||||||| Sbjct 123 TCCAGTAAGGGTCTTAACGAAAATTTGCATT 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612060774480