Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq365 96.9 3e-15
seq104 96.9 3e-15
seq520 95.1 1e-14
seq2483 89.7 5e-13
>seq365
Length=37953
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| ||||| || ||||| ||||| |||||||||||||||||||| ||| |
Sbjct 27828 ATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTCCCTTTCACAT 27887
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||||| || || || | || ||||| | || | |||||||| || || || || |
Sbjct 27888 TTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGGGTCTTAA 27947
Query 45328 CAAAAATTTGCAT 45340
|||||||||||||
Sbjct 27948 CAAAAATTTGCAT 27960
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| |||||||||||||||||||| ||| |
Sbjct 17426 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 17485
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || ||
Sbjct 17486 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACG 17545
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 17546 AAAATTTGCAT 17556
Score = 86.0 bits (94), Expect = 6e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||||| || || || | ||||| ||||| || ||||| ||||| ||||| ||||| ||
Sbjct 28375 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 28434
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||||| ||| | |||| || || || | || ||||| | || | ||||||
Sbjct 28435 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 28494
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| ||||| || || |||||||||||
Sbjct 28495 GCCGGTAAGAGTCTTAACGAAAATTTGCAT 28524
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| ||||| ||||| || ||||| ||| |
Sbjct 22308 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTC 22367
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || |||
Sbjct 22368 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 22427
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 22428 AAAATTTGCAT 22438
>seq104
Length=129113
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || |||||||||||||| |||||||||||||| ||| |
Sbjct 102639 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 102580
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | || ||||| | || | ||||| || |||| ||||| |
Sbjct 102579 TTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 102520
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 102519 CAAAAATCTGCATACCGCCAC 102499
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || || ||||||||||| |||||||||||||| ||| |
Sbjct 102925 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 102866
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 102865 TTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 102806
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 102805 CAAAAATCTGCATACCGCCAC 102785
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || || ||||||||||| |||||||||||||| ||| |
Sbjct 103211 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTTACAT 103152
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 103151 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 103092
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 103091 CAAAAATCTGCATTCCGCCAC 103071
>seq520
Length=13491
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||||| || || || ||||||| || || || ||||| ||||| || |||||||||||
Sbjct 9741 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 9800
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|||||| ||| | ||||| || || || | || ||||| | ||| | |||||
Sbjct 9801 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 9860
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || ||||||||||||||
Sbjct 9861 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 9890
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||||| || || || ||||||| || || || ||||| ||||| || |||||||||||
Sbjct 10591 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 10650
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|||||| ||| | ||||| || || || | || ||||| | ||| | |||||
Sbjct 10651 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 10710
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || ||||||||||||||
Sbjct 10711 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 10740
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| || ||||||||||||||||| ||| |
Sbjct 9194 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 9253
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||||||||| || ||
Sbjct 9254 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGAGTCTTAACG 9313
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 9314 AAAATTTGCAT 9324
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| || ||||||||||||||||| ||| |
Sbjct 10044 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 10103
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||||||||| || ||
Sbjct 10104 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGAGTCTTAACG 10163
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 10164 AAAATTTGCAT 10174
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| || ||||||||||||||||| ||| |
Sbjct 9478 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 9537
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | ||||||||| || ||||| || ||
Sbjct 9538 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGAGTCTTAACG 9597
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 9598 AAAATTTGCAT 9608
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| || ||||||||||||||||| ||| |
Sbjct 10328 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 10387
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | ||||||||| || ||||| || ||
Sbjct 10388 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGAGTCTTAACG 10447
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 10448 AAAATTTGCAT 10458
>seq2483
Length=432
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
|| || || || || | ||||| ||||| || ||||| ||||| || ||||||||||||
Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|||||| ||| | ||||| || || || | || ||||| | ||| | |||||
Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || || |||||||||||
Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCAT 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451973582490320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |