Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq365 96.9 3e-15 seq104 96.9 3e-15 seq520 95.1 1e-14 seq2483 89.7 5e-13 >seq365 Length=37953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| ||||| || ||||| ||||| |||||||||||||||||||| ||| | Sbjct 27828 ATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTCCCTTTCACAT 27887 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||||| || || || | || ||||| | || | |||||||| || || || || | Sbjct 27888 TTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGGGTCTTAA 27947 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 27948 CAAAAATTTGCAT 27960 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 17426 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 17485 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || || Sbjct 17486 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACG 17545 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 17546 AAAATTTGCAT 17556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 28375 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 28434 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | |||| || || || | || ||||| | || | |||||| Sbjct 28435 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 28494 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || || ||||||||||| Sbjct 28495 GCCGGTAAGAGTCTTAACGAAAATTTGCAT 28524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| ||||| ||||| || ||||| ||| | Sbjct 22308 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTC 22367 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 22368 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 22427 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 22428 AAAATTTGCAT 22438 >seq104 Length=129113 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| ||| | Sbjct 102639 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 102580 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | || ||||| | || | ||||| || |||| ||||| | Sbjct 102579 TTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 102520 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 102519 CAAAAATCTGCATACCGCCAC 102499 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| ||| | Sbjct 102925 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 102866 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 102865 TTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 102806 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 102805 CAAAAATCTGCATACCGCCAC 102785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| ||| | Sbjct 103211 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTTACAT 103152 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 103151 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 103092 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 103091 CAAAAATCTGCATTCCGCCAC 103071 >seq520 Length=13491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || ||||||| || || || ||||| ||||| || ||||||||||| Sbjct 9741 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 9800 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | ||||| || || || | || ||||| | ||| | ||||| Sbjct 9801 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 9860 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||||||||| Sbjct 9861 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 9890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || ||||||| || || || ||||| ||||| || ||||||||||| Sbjct 10591 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 10650 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | ||||| || || || | || ||||| | ||| | ||||| Sbjct 10651 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 10710 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||||||||| Sbjct 10711 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 10740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 9194 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 9253 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||||||||| || || Sbjct 9254 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGAGTCTTAACG 9313 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 9314 AAAATTTGCAT 9324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 10044 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 10103 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||||||||| || || Sbjct 10104 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGAGTCTTAACG 10163 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 10164 AAAATTTGCAT 10174 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 9478 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 9537 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | ||||||||| || ||||| || || Sbjct 9538 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGAGTCTTAACG 9597 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 9598 AAAATTTGCAT 9608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 10328 ATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACATTC 10387 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | ||||||||| || ||||| || || Sbjct 10388 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGAGTCTTAACG 10447 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 10448 AAAATTTGCAT 10458 >seq2483 Length=432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | ||||| ||||| || ||||| ||||| || |||||||||||| Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| ||| | ||||| || || || | || ||||| | ||| | ||||| Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||||||||| Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCAT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451973582490320