Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq241 145 1e-29 >seq241 Length=74255 Score = 145 bits (160), Expect = 1e-29 Identities = 170/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 |||||||| ||||||||||| || |||| || ||| || |||||| ||||||||| || Sbjct 56109 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 56168 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTTGGG 203958 || || || ||||||| ||| ||||| | ||||| || | || ||| || | || || Sbjct 56169 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATA-ATTCGG 56227 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 ||||| |||||||| |||| |||||| |||||| ||||| | ||| || ||||| Sbjct 56228 CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGC 56287 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||| | || | | || || ||||| ||||| ||||||||| ||| Sbjct 56288 CATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 56334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795103097455520