Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq104 87.8 1e-12 >seq104 Length=129113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || ||||| |||||||||||||||||||||||||| || ||||| || |||| Sbjct 102791 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 102734 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 102733 ATAACGTACGACCATCTTCCAGTTGTTTCCC 102703 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/91 (81%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||| ||||||||||| || ||||| || |||| Sbjct 103077 CCGCCACGTAAACGCAGCACCAAATGCAATGTGCTTTCTTTCTGGATATTGTAGTCGG-- 103020 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 103019 ATAACGTACGACCATCTTCCAGTTGTTTCCC 102989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347347407641786