Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq68 183 3e-41
>seq68
Length=159368
Score = 183 bits (202), Expect = 3e-41
Identities = 270/377 (72%), Gaps = 18/377 (5%)
Strand=Plus/Minus
Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973
|| ||||||| | || || || ||||||||||| ||||| |||||||| |||||||| |
Sbjct 129755 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCT 129696
Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033
|||| | ||| || || | ||||| ||||| |||||||| | ||| || || || ||||
Sbjct 129695 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGA 129636
Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG----CGATCCAGCGCAGCGCC 133089
| || |||| || |||| || |||| | || || |||||||||||| |||
Sbjct 129635 ACGCGACCAAACGTTCGC--AAAATGGCGAC--TGACGGTCACCGATCCAGCGCAAAGCC 129580
Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149
|| || || |||| || |||||||| || || ||||| ||||| |||| | | | |
Sbjct 129579 CAGTCTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGA--AAATCAC 129522
Query 133150 TCTTCCGAGGA--ACGCACGTAGGTGTCGAT---GAGGGTCGAATACATTTCCGAGTGTA 133204
|| | ||| ||| | |||||||||||| |||| | |||||||| || || |
Sbjct 129521 GCTCCACCGGATCACGGATGTAGGTGTCGATCAAGAGGCT---GTACATTTCGGAATGGA 129465
Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264
| || || ||||| ||||| ||||| || || | || |||||| || || | |||||
Sbjct 129464 CATTTTCTATGGCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTT 129405
Query 133265 GAGCGAAACGCTCGACC 133281
| | || ||||| |||
Sbjct 129404 GCGAAAATCGCTCCACC 129388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500140026177280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |