Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq134 336 2e-86 seq182 138 9e-27 seq205 111 1e-18 >seq134 Length=108639 Score = 336 bits (372), Expect = 2e-86 Identities = 495/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 13350 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 13291 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 13290 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 13231 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 13230 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 13171 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 13170 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 13111 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 13110 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 13051 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 13050 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 12991 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 12990 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 12931 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 ||| | || |||| ||| |||||||| | ||||||||| || || || |||| Sbjct 12930 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 12871 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 12870 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 12811 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 |||||| ||| || |||||||||||||| |||| || || || || | |||||| || Sbjct 12810 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 12751 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 12750 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 12691 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 12690 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 12650 Score = 109 bits (120), Expect = 4e-18 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 13819 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 13760 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 || ||||||| ||| || || || | || |||||||| |||| || || || || || Sbjct 13759 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 13701 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 13700 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 13641 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 13640 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 13581 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | ||||| |||||| Sbjct 13580 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 13539 >seq182 Length=91112 Score = 138 bits (152), Expect = 9e-27 Identities = 343/512 (67%), Gaps = 18/512 (4%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 35738 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 35679 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||||| |||||| ||||| || ||||| || | ||||||| | |||||||| Sbjct 35678 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 35619 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 35618 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 35559 Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || | | ||| ||| |||| | | | | | || | ||||| | | | Sbjct 35558 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 35503 Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496 || || || ||||||||| ||| ||| | ||||| ||| | || | Sbjct 35502 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 35443 Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555 |||| ||| | | || |||||||| || | ||||| ||||| | | || | | Sbjct 35442 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 35384 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612 ||| ||| || || || || |||||| | | || | ||||| | ||||| || | Sbjct 35383 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 35324 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || | ||||| || |||||||| |||||||||||||| |||||| | | || | Sbjct 35323 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 35264 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 | || ||| ||| || ||| || |||||| Sbjct 35263 CAAC---ACTGAAAATTATTC--AATTCAATA 35237 >seq205 Length=84253 Score = 111 bits (122), Expect = 1e-18 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 76029 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 75970 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 |||||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 75969 GTAACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 75910 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 75909 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 75866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780562274692852