Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq134 336 2e-86
seq182 138 9e-27
seq205 111 1e-18
>seq134
Length=108639
Score = 336 bits (372), Expect = 2e-86
Identities = 495/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 13350 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 13291
Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 13290 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 13231
Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 13230 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 13171
Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 13170 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 13111
Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 13110 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 13051
Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
| ||| || | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 13050 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 12991
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432
||| |||||| | | || ||| || || || ||| |||| || | |||||
Sbjct 12990 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 12931
Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492
||| | || |||| ||| |||||||| | ||||||||| || || || ||||
Sbjct 12930 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 12871
Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 12870 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 12811
Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612
|||||| ||| || |||||||||||||| |||| || || || || | |||||| ||
Sbjct 12810 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 12751
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 12750 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 12691
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
| |||||||| | || || || |||||||| |||||||||
Sbjct 12690 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 12650
Score = 109 bits (120), Expect = 4e-18
Identities = 195/282 (69%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 13819 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 13760
Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722
|| ||||||| ||| || || || | || |||||||| |||| || || || || ||
Sbjct 13759 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 13701
Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 13700 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 13641
Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842
||| | | | | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 13640 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 13581
Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884
| | ||||||| |||||| | | ||||| ||||||
Sbjct 13580 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 13539
>seq182
Length=91112
Score = 138 bits (152), Expect = 9e-27
Identities = 343/512 (67%), Gaps = 18/512 (4%)
Strand=Plus/Minus
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 35738 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 35679
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320
|| | ||||| |||||| ||||| || ||||| || | ||||||| | ||||||||
Sbjct 35678 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 35619
Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 35618 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 35559
Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437
|| | | ||| ||| |||| | | | | | || | ||||| | | |
Sbjct 35558 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 35503
Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 35502 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 35443
Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555
|||| ||| | | || |||||||| || | ||||| ||||| | | || | |
Sbjct 35442 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 35384
Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 35383 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 35324
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
| || | ||||| || |||||||| |||||||||||||| |||||| | | || |
Sbjct 35323 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 35264
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATA 518704
| || ||| ||| || ||| || ||||||
Sbjct 35263 CAAC---ACTGAAAATTATTC--AATTCAATA 35237
>seq205
Length=84253
Score = 111 bits (122), Expect = 1e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 76029 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 75970
Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446
|||||| | | | || |||||||| |||| ||| || || |||||||||| |||
Sbjct 75969 GTAACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 75910
Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 75909 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 75866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780562274692852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |