Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq134 246 4e-60 seq182 140 4e-28 >seq134 Length=108639 Score = 246 bits (272), Expect = 4e-60 Identities = 547/814 (67%), Gaps = 10/814 (1%) Strand=Plus/Minus Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 ||||| ||||| || || ||||| || || || || ||||| | || || || ||| Sbjct 13456 AACGTGCGCTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 13397 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || || ||||| | || || |||||||| | ||| || | | | Sbjct 13396 GACATGTCCTTCTTGTTCTTGCGCTTAAACTCGGCCACGAAATGATTTACCATGCGATTG 13337 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||||||||| || || || || ||||| | ||||| ||||| || || Sbjct 13336 TCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 13277 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 |||| ||| | || | || |||||||| ||||||||||| |||||||| || || || Sbjct 13276 TCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAATATCAGAACA 13217 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||||| || || | || |||| || || || || || || ||||| |||||||| Sbjct 13216 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 13158 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || ||||| || ||| |||| |||| ||| ||| | || ||||| ||||| || | Sbjct 13157 GTTGATGATACGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 13099 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || ||||||||||| || ||||| || || | || || ||| | || | || || | Sbjct 13098 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAACAGTTTTTCCCA 13039 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 ||| | ||| || | || ||||| || | ||||| | || ||||| | | Sbjct 13038 AATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGATTTCTTCTGGTG 12979 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 ||| |||| || || || | || |||| ||| | ||||| || || || Sbjct 12978 TAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGATCCATCGT 12922 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 ||||| || | | ||||| ||||||||| || ||| || ||| | Sbjct 12921 TGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCATCAAATCGAC 12862 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || ||||| |||||||||||||| || | || |||| || ||| || | Sbjct 12861 GACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACTTGATTTT 12802 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | ||||| || || || || ||||| || || || || || || || ||| || | Sbjct 12801 TTGCCGCATCTCCAATCAGTCGTTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTGG 12745 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | ||||||||||| ||||| ||||||||||| || | | || | ||||| || | Sbjct 12744 TACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGCCAACAC 12685 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | ||||| || || |||||||| || || || Sbjct 12684 AACTGTACGTAGTACCCAAATCAATTCCAATAGC 12651 Score = 116 bits (128), Expect = 5e-21 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || || ||||| || || |||| || |||||||| || |||||| Sbjct 13813 GCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCATTAAAA 13754 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| |||| | |||| ||| || || || || || || || |||||||| | | Sbjct 13753 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGAACCGCCCACCAAAACAACT 13694 Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||||| | ||| || | || | || ||||| | |||||| || |||||| Sbjct 13693 TCATGAATCACT---GCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 13637 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | |||||||||||| | || || || || || || | ||||| | || Sbjct 13636 AAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGTG 13577 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 |||||||||| ||| ||||| | ||||||||||||| Sbjct 13576 TAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAATG 13538 >seq182 Length=91112 Score = 140 bits (154), Expect = 4e-28 Identities = 310/462 (67%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || || || |||| | || || |||||||| || | |||||||| || ||| Sbjct 35738 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 35679 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || ||||| | |||||| || || || || ||||| ||||| || | | |||| || Sbjct 35678 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 35619 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || | ||| | || || || ||||||||||| | |||||||| |||||| ||||| Sbjct 35618 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 35559 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | ||| |||| |||||||||||| | || | || | ||||| || Sbjct 35558 GGAGTGAACAATTTCTTTTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCTCGATTTT 35499 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGAAAA 7929 | | ||| | | | ||| ||| ||| |||| | || || ||||| | Sbjct 35498 TC---AACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-ATCCGACCA 35443 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 | || |||| | |||||||||||| || || || || | || || ||| || Sbjct 35442 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAACTG 35383 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 || ||||| ||||| ||||| ||||| || | |||||| || || ||||| || Sbjct 35382 ATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACGG 35323 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| ||||||| || || || || ||||||||||| || || Sbjct 35322 GGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACG 35281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635091182923280