Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq241 89.7 6e-13 seq427 87.8 2e-12 seq573 82.4 9e-11 >seq241 Length=74255 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | ||| Sbjct 56156 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 56215 Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531 | | |||| ||| | || | |||| |||||| || || || |||||| | Sbjct 56216 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTC 56274 Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591 | | ||||| |||||||| |||| || |||||| ||||||||| || |||||||||| Sbjct 56275 CCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 56334 Query 109592 A 109592 | Sbjct 56335 A 56335 >seq427 Length=25386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 7567 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 7624 >seq573 Length=10106 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 2738 ATAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 2681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588937407347600