Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq241 129 7e-25
>seq241
Length=74255
Score = 129 bits (142), Expect = 7e-25
Identities = 186/267 (70%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545
|| ||||||||| | ||| | || ||||||||| | |||||||||||||| || ||
Sbjct 56765 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 56824
Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605
||| || || || | ||| || | || ||||| | |||| || | || |||||
Sbjct 56825 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAACT 56884
Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665
||| || ||| |||||| || |||||||| ||||| | || | || |||||
Sbjct 56885 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 56944
Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725
| |||||||| ||||| || | ||| ||||||||||| ||||||||
Sbjct 56945 TTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACACCAAT 57004
Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752
||||||||||| |||| ||| |||||
Sbjct 57005 ACCAATTGGTCGATGACGTTTGTTAGA 57031
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
||||| || ||||| ||||| || ||| || | || ||||||||||||| ||| |||
Sbjct 57605 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 57664
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
|||| ||||||||| | || || | | |||| |||| ||| |||||||| ||
Sbjct 57665 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 57724
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| ||| ||||| | | || |||||| ||| | ||| |||| ||||||
Sbjct 57725 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 57784
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331
|| || | ||| || || ||||| ||||| |||||
Sbjct 57785 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 57819
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 46973 tttttCCACAGTAAACTTAATTGGATT-ACTCGCTGATTTTGTTCGTAAATAATACATAC 47031
||| ||||| || |||| ||| | | ||| |||| || |||| ||||| ||||| |
Sbjct 56108 TTTGTCCACGGTGAACTGAATAGCCGTCACT-GCTGGCTTGGTTCTCAAATAGTACATCC 56166
Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091
|||| || | ||| |||| || ||||||||||| || ||||||| |||| | |
Sbjct 56167 CAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCG 56226
Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151
| || | || |||||||| | || || || ||||| ||||| || || ||||| |
Sbjct 56227 GCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGG 56286
Query 47152 CCATATCTA 47160
|||| ||||
Sbjct 56287 CCATGTCTA 56295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562071967820880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |