Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq520 136 3e-27 seq365 136 3e-27 seq104 125 6e-24 seq2483 120 2e-22 >seq520 Length=13491 Score = 136 bits (150), Expect = 3e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||||||||||||||||||||| || ||||| || ||||||||||| Sbjct 9741 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 9800 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | ||||| Sbjct 9801 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 9860 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || ||||| || ||||| Sbjct 9861 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 9890 Score = 136 bits (150), Expect = 3e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||||||||||||||||||||| || ||||| || ||||||||||| Sbjct 10591 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 10650 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | ||||| Sbjct 10651 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 10710 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || ||||| || ||||| Sbjct 10711 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 10740 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| || ||||||||||||||||| Sbjct 9183 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9242 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||||| Sbjct 9243 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 9302 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 9303 GAGTCTTAACGAAAATTTGCAT 9324 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| || ||||||||||||||||| Sbjct 10033 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10092 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||||| Sbjct 10093 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 10152 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 10153 GAGTCTTAACGAAAATTTGCAT 10174 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| || ||||||||||||||||| Sbjct 9467 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9526 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||||| || | Sbjct 9527 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 9586 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 9587 GAGTCTTAACGAAAATTTGCAT 9608 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| || ||||||||||||||||| Sbjct 10317 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10376 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||||| || | Sbjct 10377 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 10436 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 10437 GAGTCTTAACGAAAATTTGCAT 10458 Score = 105 bits (116), Expect = 5e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| || ||||||||||||||||| Sbjct 10883 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10942 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| Sbjct 10943 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGT 11000 >seq365 Length=37953 Score = 136 bits (150), Expect = 3e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||| |||||| |||||||||||||| |||||||| || ||||| |||||||||||||| Sbjct 27811 CAATGACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTG 27870 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||| ||| |||||| || ||||| | ||||||||| | |||| ||||| Sbjct 27871 AATTTTCCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTT 27930 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || ||||| || ||||| Sbjct 27931 GCCAGTGAGGGTCTTAACAAAAATTTGCAT 27960 Score = 131 bits (144), Expect = 1e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| ||||| |||| ||||||||||| || |||||||||||||| |||||||| | Sbjct 29294 GCATACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCT 29353 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||||||| |||| | || || |||| || |||||||| || | |||||| || | Sbjct 29354 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 29413 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| |||||||||||||| Sbjct 29414 TCAACGTTTTCACAAATATCTGCAT 29438 Score = 131 bits (144), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 || |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 29624 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 29683 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 ||| || ||| |||| | ||||| || | ||||||||| ||||| | ||||| || Sbjct 29684 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 29743 Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||||| |||||||||||||| Sbjct 29744 AGTCAGAGTTTTCACAAATATCTGCAT 29770 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| || Sbjct 28375 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 28434 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||||||| | |||| || ||||| | ||| ||||| | |||| |||||| Sbjct 28435 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 28494 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| || || || || ||||| Sbjct 28495 GCCGGTAAGAGTCTTAACGAAAATTTGCAT 28524 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 17415 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17474 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 17475 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17534 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 17535 GAGTCTTAACGAAAATTTGCAT 17556 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| |||||||||||| || ||||| || || ||||||||||| || Sbjct 17132 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 17191 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || ||||| ||||| | ||||||||| | |||| ||||| || |||| Sbjct 17192 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 17251 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| Sbjct 17252 GGGTCTTAACAAAAATTTGCAT 17273 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 22297 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 22356 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 22357 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 22416 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| || ||||| Sbjct 22417 GAGTCTTAACAAAAATTTGCAT 22438 >seq104 Length=129113 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||||||||| || || ||||| |||||||||||||| |||||||||||||| Sbjct 102648 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 102589 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | || || || | ||| ||||| | |||| ||||| || |||| Sbjct 102588 TTTTCACATTTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTA 102529 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 102528 ATGTTTTCACAAAAATCTGCAT 102507 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||||||||| || || ||||| || ||||||||||| |||||||||||||| Sbjct 103220 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 103161 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| |||| | || ||||| | || ||||| | |||| ||||| || |||| Sbjct 103160 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 103101 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 103100 ATGTTTTCACAAAAATCTGCAT 103079 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||||||||| || || ||||| || ||||||||||| |||||||||||||| Sbjct 102934 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 102875 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | || || || | || ||||| | |||| ||||| || |||| Sbjct 102874 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 102815 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 102814 ATGTTTTCACAAAAATCTGCAT 102793 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || || | || ||||| || ||||||||||| ||||| |||||||| Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || || Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 102102 AGTGTCTTCACGAATATCTGCAT 102080 >seq2483 Length=432 Score = 120 bits (132), Expect = 2e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| ||||| |||||||| |||||||| || ||||| || |||||||||||| Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | ||||| Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCAT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396253083011394