Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq134 336 1e-86
seq365 116 2e-20
seq2483 113 3e-19
seq182 113 3e-19
seq520 107 1e-17
seq30 96.9 2e-14
seq210 93.3 3e-13
seq7 91.5 1e-12
>seq134
Length=108639
Score = 336 bits (372), Expect = 1e-86
Identities = 444/611 (73%), Gaps = 11/611 (2%)
Strand=Plus/Plus
Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376
||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || |
Sbjct 12639 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTC 12698
Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436
|| |||||||||| ||||| |||||||| || ||||| ||| | || || ||| |||
Sbjct 12699 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 12758
Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496
||| |||| || || || |||| || ||||||||||| || ||| |||||| ||| |
Sbjct 12759 GTTGCTTTCACCGATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 12818
Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556
|||||| |||||| |||||||||| || || | || |||||| ||||||||| |
Sbjct 12819 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 12878
Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616
| || || ||||||||| |||||||| || || | || || | ||| |||||
Sbjct 12879 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAATTATCAACGATGGATCGAAACCT 12938
Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674
| || ||| |||||| ||| || | || |||| |||| ||| |||| |
Sbjct 12939 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 12996
Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732
| ||||| |||| || ||||| |||| || |||| ||| | ||| || || |
Sbjct 12997 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 13054
Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792
||||| |||||||||||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 13055 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 13114
Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852
|| |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || ||
Sbjct 13115 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 13174
Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909
| |||||||||| ||||||| || || | ||| ||||||| | || |||||
Sbjct 13175 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 13234
Query 474910 TTGTGGAGGTA 474920
| |||| ||||
Sbjct 13235 TGGTGGTGGTA 13245
>seq365
Length=37953
Score = 116 bits (128), Expect = 2e-20
Identities = 110/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 17535
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||||||||||||
Sbjct 17536 AGTCTTAACGAAAATTTG 17553
Score = 114 bits (126), Expect = 8e-20
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 28378 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 28437
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 28438 TTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 28496
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||||||||||||
Sbjct 28497 CGGTAAGAGTCTTAACGAAAATTTG 28521
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 22853 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 22912
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| |||||| ||||||| || | | || ||| || || ||||| ||
Sbjct 22913 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 22971
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 22972 AGTAAGGGTCTTAACGAAAATTTG 22995
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 28659 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 28718
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| |||||| ||||||| || | | || ||| || || ||||| ||
Sbjct 28719 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 28777
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 28778 AGTAAGGGTCTTAACGAAAATTTG 28801
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 17134 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17193
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||| |||||||| || | | || ||| || || ||||| || || ||
Sbjct 17194 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 17252
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 17253 GGTCTTAACAAAAATTTG 17270
Score = 105 bits (116), Expect = 4e-17
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688
||| |||||||| || | |||||||||||| || ||||||||||| || |||||||| ||
Sbjct 27817 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTT 27876
Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747
||| ||| ||| || ||||||| || | | || ||| || || ||||| || |
Sbjct 27877 CCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAG 27935
Query 480748 TGAGAGTCTTAACGAAAATTTG 480769
|||| |||||||| ||||||||
Sbjct 27936 TGAGGGTCTTAACAAAAATTTG 27957
Score = 104 bits (114), Expect = 2e-16
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 22299 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22358
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 22359 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 22418
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 22419 GTCTTAACAAAAATTTG 22435
Score = 102 bits (112), Expect = 5e-16
Identities = 111/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||| ||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 28096 TTACTTACCAGCGAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 28155
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| |||||| ||||||| || | | || ||| || || ||||| |
Sbjct 28156 TTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTTC 28214
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
| || || |||||||| ||||||||
Sbjct 28215 CAGTAAGGGTCTTAACAAAAATTTG 28239
Score = 89.7 bits (98), Expect = 3e-12
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 27533 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 27592
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | | ||| || || ||||| || |||||
Sbjct 27593 TTTACATTCTCTATTGTATCAGATGGTTCCACCTCCAA-TGTGATGGTTTTGCCAGTGAG 27651
Query 480752 AGTCTTAACGAAAATTTG 480769
||||| || ||||||||
Sbjct 27652 GGTCTTGACAAAAATTTG 27669
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| |
Sbjct 29299 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 29358
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 29359 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 29418
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 29419 GTTTTCACAAATATCTG 29435
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 29624 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 29683
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || || | | || ||| || ||||| ||||| ||
Sbjct 29684 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 29743
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 29744 AGTCAGAGTTTTCACAAATATCTG 29767
Score = 87.8 bits (96), Expect = 1e-11
Identities = 105/138 (76%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||| ||||| || |||||||||||||| || || || || |
Sbjct 22583 CCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22642
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| ||| | ||||||| || | | || ||| || || ||||| || || ||
Sbjct 22643 TTTACA--TTC--TCGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCCAGTAAG 22697
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 22698 GGTCTTAACGAAAATTTG 22715
>seq2483
Length=432
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 239 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 180
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| ||
Sbjct 179 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTCC 121
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 120 AGTAAGGGTCTTAACGAAAATTTG 97
>seq182
Length=91112
Score = 113 bits (124), Expect = 3e-19
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697
||||||| ||| || | || ||| ||||||| | |||||||| |||||||||
Sbjct 35536 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 35595
Query 474698 CAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGC 474756
||| || ||| | ||| | || ||||||| | |||| || | || ||||||||
Sbjct 35596 GAAATTGCCGAGG-CTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGC 35654
Query 474757 ATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAA 474816
||||| || ||| | ||||||||||| || |||||||| || | ||||| ||||||||
Sbjct 35655 TTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA 35714
Query 474817 TGTTTTACGTATTATTAATGAACC 474840
|||| | || || || || |||||
Sbjct 35715 TGTTGTTCGAATCATCAACGAACC 35738
Score = 93.3 bits (102), Expect = 3e-13
Identities = 242/366 (66%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
||||| || |||||||| || || || ||||| ||||| || | || | || ||| ||
Sbjct 36484 AATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGTGAA 36543
Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912
|| ||| ||| | || |||| || | ||||| | ||| | | || || ||
Sbjct 36544 ---GA--AGATACTGG-TGATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGAATT 36597
Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972
||||| || || || | ||||| || || ||| ||| ||||| | || |||
Sbjct 36598 GAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACCAAG 36657
Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032
||||| | |||| ||| | | || ||||| | || || || || ||| | ||
Sbjct 36658 AAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTTTTC 36717
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092
||||| ||| || | | || ||||| ||| | ||||| | || |||| ||
Sbjct 36718 GAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGACCGGC 36777
Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152
|| ||||| ||||| | || || || |||||||||||||| || |||||||| | ||
Sbjct 36778 ATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATTGACGTGAAC 36837
Query 476153 GGTATT 476158
|| |||
Sbjct 36838 GGCATT 36843
>seq520
Length=13491
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 9185 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9244
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 9245 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 9304
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 9305 GTCTTAACGAAAATTTG 9321
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 10035 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10094
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 10095 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 10154
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 10155 GTCTTAACGAAAATTTG 10171
Score = 104 bits (114), Expect = 2e-16
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 9469 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9528
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| || || |||
Sbjct 9529 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 9588
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 9589 GTCTTAACGAAAATTTG 9605
Score = 104 bits (114), Expect = 2e-16
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 10319 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10378
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| || || |||
Sbjct 10379 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 10438
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 10439 GTCTTAACGAAAATTTG 10455
Score = 96.9 bits (106), Expect = 2e-14
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| |||||||| || | ||| |||||||| || |||||||| || || ||||||||
Sbjct 9744 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 9803
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| |
Sbjct 9804 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 9862
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||||||||| ||||||||
Sbjct 9863 CAGTAAGAGTCTTAACAAAAATTTG 9887
Score = 96.9 bits (106), Expect = 2e-14
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| |||||||| || | ||| |||||||| || |||||||| || || ||||||||
Sbjct 10594 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 10653
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| |
Sbjct 10654 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 10712
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||||||||| ||||||||
Sbjct 10713 CAGTAAGAGTCTTAACAAAAATTTG 10737
>seq30
Length=209122
Score = 96.9 bits (106), Expect = 2e-14
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134
|||| ||||||| ||| |||| ||||| |||||||| | || || ||| |||||||
Sbjct 66458 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 66517
Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193
|||| ||| ||| ||||| || ||| | ||||| || | | |||| |||
Sbjct 66518 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 66576
Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253
|| ||||| | |||||||| |||| || ||||| || ||||||| | |||||||
Sbjct 66577 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 66636
Query 296254 TATAAAGAGATTATTGATCC 296273
|| ||||| | ||||||||
Sbjct 66637 TACAAAGAAGTCATTGATCC 66656
>seq210
Length=82828
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173
||||| || || |||||||||||| || | || |||||||||||||||||| ||
Sbjct 76531 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 76472
Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233
||||| ||||| || ||| ||||||||| | || | || || | ||||
Sbjct 76471 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 76412
Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277
||| | | || |||||| |||| ||||||||||| ||||||||
Sbjct 76411 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 76368
>seq7
Length=317591
Score = 91.5 bits (100), Expect = 1e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| ||||| || || | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 241592 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 241533
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179
|||||||| || |||| | |||| | |||
Sbjct 241532 AATGGTATAGTTCATGTCAGTGCTCGAGAT 241503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267954345185816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |