Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq134 336 1e-86 seq365 116 2e-20 seq2483 113 3e-19 seq182 113 3e-19 seq520 107 1e-17 seq30 96.9 2e-14 seq210 93.3 3e-13 seq7 91.5 1e-12 >seq134 Length=108639 Score = 336 bits (372), Expect = 1e-86 Identities = 444/611 (73%), Gaps = 11/611 (2%) Strand=Plus/Plus Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376 ||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || | Sbjct 12639 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTC 12698 Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436 || |||||||||| ||||| |||||||| || ||||| ||| | || || ||| ||| Sbjct 12699 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 12758 Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 ||| |||| || || || |||| || ||||||||||| || ||| |||||| ||| | Sbjct 12759 GTTGCTTTCACCGATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 12818 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556 |||||| |||||| |||||||||| || || | || |||||| ||||||||| | Sbjct 12819 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 12878 Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616 | || || ||||||||| |||||||| || || | || || | ||| ||||| Sbjct 12879 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAATTATCAACGATGGATCGAAACCT 12938 Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674 | || ||| |||||| ||| || | || |||| |||| ||| |||| | Sbjct 12939 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 12996 Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732 | ||||| |||| || ||||| |||| || |||| ||| | ||| || || | Sbjct 12997 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 13054 Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 ||||| |||||||||||||| ||||||||||| |||||||| ||||| || || ||||| Sbjct 13055 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 13114 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || || Sbjct 13115 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 13174 Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909 | |||||||||| ||||||| || || | ||| ||||||| | || ||||| Sbjct 13175 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 13234 Query 474910 TTGTGGAGGTA 474920 | |||| |||| Sbjct 13235 TGGTGGTGGTA 13245 >seq365 Length=37953 Score = 116 bits (128), Expect = 2e-20 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| ||| || ||||| ||||| || Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 17535 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||||||||||||| Sbjct 17536 AGTCTTAACGAAAATTTG 17553 Score = 114 bits (126), Expect = 8e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 28378 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 28437 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| || || ||||||| || | | || ||| ||| || ||||| | Sbjct 28438 TTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 28496 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 |||| |||||||||||||||||||| Sbjct 28497 CGGTAAGAGTCTTAACGAAAATTTG 28521 Score = 113 bits (124), Expect = 3e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 22853 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 22912 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| |||||| ||||||| || | | || ||| || || ||||| || Sbjct 22913 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 22971 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 22972 AGTAAGGGTCTTAACGAAAATTTG 22995 Score = 113 bits (124), Expect = 3e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 28659 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 28718 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| |||||| ||||||| || | | || ||| || || ||||| || Sbjct 28719 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 28777 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 28778 AGTAAGGGTCTTAACGAAAATTTG 28801 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| | Sbjct 17134 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17193 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||| |||||||| || | | || ||| || || ||||| || || || Sbjct 17194 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 17252 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 17253 GGTCTTAACAAAAATTTG 17270 Score = 105 bits (116), Expect = 4e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| || | |||||||||||| || ||||||||||| || |||||||| || Sbjct 27817 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTT 27876 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||| ||| ||| || ||||||| || | | || ||| || || ||||| || | Sbjct 27877 CCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAG 27935 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 |||| |||||||| |||||||| Sbjct 27936 TGAGGGTCTTAACAAAAATTTG 27957 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||||||||| || || || || | Sbjct 22299 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22358 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 22359 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 22418 Query 480753 GTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 22419 GTCTTAACAAAAATTTG 22435 Score = 102 bits (112), Expect = 5e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||| ||||| | |||||||||||| || |||||||||||||| || || || Sbjct 28096 TTACTTACCAGCGAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 28155 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| |||||| ||||||| || | | || ||| || || ||||| | Sbjct 28156 TTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTTC 28214 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| |||||||| Sbjct 28215 CAGTAAGGGTCTTAACAAAAATTTG 28239 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||||||||| || || || || | Sbjct 27533 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 27592 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | | ||| || || ||||| || ||||| Sbjct 27593 TTTACATTCTCTATTGTATCAGATGGTTCCACCTCCAA-TGTGATGGTTTTGCCAGTGAG 27651 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||| || |||||||| Sbjct 27652 GGTCTTGACAAAAATTTG 27669 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| | Sbjct 29299 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 29358 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 29359 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 29418 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 29419 GTTTTCACAAATATCTG 29435 Score = 89.7 bits (98), Expect = 3e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| |||||||||||||| || |||||||| || || || ||||| Sbjct 29624 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 29683 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||| |||||| || || | | || ||| || ||||| ||||| || Sbjct 29684 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 29743 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || || Sbjct 29744 AGTCAGAGTTTTCACAAATATCTG 29767 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/138 (76%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||| ||||| || |||||||||||||| || || || || | Sbjct 22583 CCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22642 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| ||| | ||||||| || | | || ||| || || ||||| || || || Sbjct 22643 TTTACA--TTC--TCGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCCAGTAAG 22697 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 22698 GGTCTTAACGAAAATTTG 22715 >seq2483 Length=432 Score = 113 bits (124), Expect = 3e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| Sbjct 239 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 180 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 ||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| || Sbjct 179 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTCC 121 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 120 AGTAAGGGTCTTAACGAAAATTTG 97 >seq182 Length=91112 Score = 113 bits (124), Expect = 3e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 ||||||| ||| || | || ||| ||||||| | |||||||| ||||||||| Sbjct 35536 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 35595 Query 474698 CAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGC 474756 ||| || ||| | ||| | || ||||||| | |||| || | || |||||||| Sbjct 35596 GAAATTGCCGAGG-CTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGC 35654 Query 474757 ATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAA 474816 ||||| || ||| | ||||||||||| || |||||||| || | ||||| |||||||| Sbjct 35655 TTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA 35714 Query 474817 TGTTTTACGTATTATTAATGAACC 474840 |||| | || || || || ||||| Sbjct 35715 TGTTGTTCGAATCATCAACGAACC 35738 Score = 93.3 bits (102), Expect = 3e-13 Identities = 242/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| || |||||||| || || || ||||| ||||| || | || | || ||| || Sbjct 36484 AATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGTGAA 36543 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || ||| ||| | || |||| || | ||||| | ||| | | || || || Sbjct 36544 ---GA--AGATACTGG-TGATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGAATT 36597 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| || || || | ||||| || || ||| ||| ||||| | || ||| Sbjct 36598 GAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACCAAG 36657 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 ||||| | |||| ||| | | || ||||| | || || || || ||| | || Sbjct 36658 AAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTTTTC 36717 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||| ||| || | | || ||||| ||| | ||||| | || |||| || Sbjct 36718 GAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGACCGGC 36777 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || ||||| ||||| | || || || |||||||||||||| || |||||||| | || Sbjct 36778 ATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATTGACGTGAAC 36837 Query 476153 GGTATT 476158 || ||| Sbjct 36838 GGCATT 36843 >seq520 Length=13491 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||| || || |||||||| || | Sbjct 9185 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9244 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 9245 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 9304 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 9305 GTCTTAACGAAAATTTG 9321 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||| || || |||||||| || | Sbjct 10035 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10094 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 10095 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 10154 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 10155 GTCTTAACGAAAATTTG 10171 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||| || || |||||||| || | Sbjct 9469 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9528 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| || || ||| Sbjct 9529 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 9588 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 9589 GTCTTAACGAAAATTTG 9605 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||| || || |||||||| || | Sbjct 10319 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10378 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| || || ||| Sbjct 10379 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 10438 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 10439 GTCTTAACGAAAATTTG 10455 Score = 96.9 bits (106), Expect = 2e-14 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| |||||||| || | ||| |||||||| || |||||||| || || |||||||| Sbjct 9744 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 9803 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| ||| || ||||||| || | | || ||| | || | ||||| | Sbjct 9804 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 9862 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||||||||| |||||||| Sbjct 9863 CAGTAAGAGTCTTAACAAAAATTTG 9887 Score = 96.9 bits (106), Expect = 2e-14 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| |||||||| || | ||| |||||||| || |||||||| || || |||||||| Sbjct 10594 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 10653 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| ||| || ||||||| || | | || ||| | || | ||||| | Sbjct 10654 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 10712 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||||||||| |||||||| Sbjct 10713 CAGTAAGAGTCTTAACAAAAATTTG 10737 >seq30 Length=209122 Score = 96.9 bits (106), Expect = 2e-14 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134 |||| ||||||| ||| |||| ||||| |||||||| | || || ||| ||||||| Sbjct 66458 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 66517 Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193 |||| ||| ||| ||||| || ||| | ||||| || | | |||| ||| Sbjct 66518 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 66576 Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253 || ||||| | |||||||| |||| || ||||| || ||||||| | ||||||| Sbjct 66577 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 66636 Query 296254 TATAAAGAGATTATTGATCC 296273 || ||||| | |||||||| Sbjct 66637 TACAAAGAAGTCATTGATCC 66656 >seq210 Length=82828 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 ||||| || || |||||||||||| || | || |||||||||||||||||| || Sbjct 76531 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 76472 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233 ||||| ||||| || ||| ||||||||| | || | || || | |||| Sbjct 76471 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 76412 Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277 ||| | | || |||||| |||| ||||||||||| |||||||| Sbjct 76411 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 76368 >seq7 Length=317591 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| ||||| || || | |||||||| ||||| ||||||||||||||||| |||||| Sbjct 241592 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 241533 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 |||||||| || |||| | |||| | ||| Sbjct 241532 AATGGTATAGTTCATGTCAGTGCTCGAGAT 241503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267954345185816