Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq134 306 5e-78
seq365 134 2e-26
seq104 134 2e-26
seq520 125 9e-24
seq182 122 1e-22
seq2483 118 1e-21
seq80 96.9 5e-15
seq749 86.0 8e-12
>seq134
Length=108639
Score = 306 bits (338), Expect = 5e-78
Identities = 485/692 (70%), Gaps = 9/692 (1%)
Strand=Plus/Plus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|||||||| || ||||| || ||||| ||| |||||||| || | || ||| |
Sbjct 12651 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 12710
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
|| || ||||| | || || ||||| || ||||| || ||| || ||||| || ||
Sbjct 12711 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 12770
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| ||||| || |||||||||| ||||||||||| || |||| ||| |||
Sbjct 12771 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 12830
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| || ||||| |||||||| || || ||||| ||| ||| || ||
Sbjct 12831 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 12890
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596
||||| || | ||| | | || || | || || ||| || |||| |||
Sbjct 12891 GATATGAAACATTGGCCATTCAAAATTATCAACGATG-----GATCGAAACCTAAAATTC 12945
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
| || |||| | || ||| ||| |||| | || |||||||| |||||||||
Sbjct 12946 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGT 13005
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| ||
Sbjct 13006 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 13065
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776
| ||||| || || || || | ||||| || || |||||||| || ||||||| | |
Sbjct 13066 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 13125
Query 195777 TTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835
|| | ||| | || ||| || | || ||||| |||||||||||||||||||||||||||
Sbjct 13126 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 13184
Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895
|| || || | || | || || |||||| |||| ||||| || |||||||||
Sbjct 13185 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 13244
Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955
|| |||||||| || || | | || |||| ||| || || || || ||| |||| |||
Sbjct 13245 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 13304
Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
||||| |||||| | |||||||| || |||||
Sbjct 13305 GGTGACACTCATTTGGGTGGTGAGGACTTCGA 13336
>seq365
Length=37953
Score = 134 bits (148), Expect = 2e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | || |||||||| || || || || |||||| |||||
Sbjct 29438 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 29379
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| |||||||||||| || |||||||||||||| |||||
Sbjct 29378 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 29319
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || || |||||||||||||
Sbjct 29318 CAGCGGCTGATTTTTGCTGGTA 29297
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | ||||| || | ||
Sbjct 27672 ATGCAAATTTTTGTCAAGACCCTCACTGGCAAAACCATCACATTGGAGGTGGAACCATCT 27613
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 27612 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 27553
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 27552 CAACGTCTGATTTTTGCTGGTA 27531
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 17556 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17497
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 17496 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17437
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 17436 CAACGTCTGATTTTTGCTGGTA 17415
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 22438 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 22379
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 22378 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 22319
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 22318 CAACGTCTGATTTTTGCTGGTA 22297
Score = 123 bits (136), Expect = 3e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| || ||||| ||||| || || || || || || | |||
Sbjct 29770 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 29711
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|||||||| || || | || | || ||||| ||||| || || ||||||||||||||
Sbjct 29710 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 29651
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| || ||||||||||||||
Sbjct 29650 CAACGTCTGATTTTTGCTGGTAA 29628
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 22998 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 22939
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 22938 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 22879
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 22878 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 22849
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||||||||||||||| ||||| | || || || | ||
Sbjct 28242 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACATTGGAAGTGGAACCATCT 28183
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 28182 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28123
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||| ||||||||
Sbjct 28122 CAACGTTTGATTTTCGCTGGTAA 28100
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 28804 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 28745
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 28744 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28685
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 28684 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 28655
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 27960 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 27901
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || ||||||||||| ||||| |||||||| |||||
Sbjct 27900 GATACAATAGAAAATGTGAAAGGGAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 27841
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | || |||||||||||
Sbjct 27840 CAACGTTTGATATTTGCTGGTAA 27818
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 28524 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 28465
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||
Sbjct 28464 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28405
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 28404 CAACGTTTGATTTTTGCTGGTAA 28382
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 17273 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATCT 17214
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || | || || | |||| ||||||||||||||||| || ||||| || |||||
Sbjct 17213 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 17154
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || || |||||||||||||
Sbjct 17153 CAGCGTCTGATTTTTGCTGGTA 17132
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 22718 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 22659
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 22658 GATAC----GAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 22603
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| | |||||||||||||
Sbjct 22602 CAACGTTTGATTTTTGCTGGTA 22581
>seq104
Length=129113
Score = 134 bits (148), Expect = 2e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | |
Sbjct 102791 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 102850
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
|||| || || || || | ||| || |||||||||||||||||||||||||| ||||
Sbjct 102851 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 102910
Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003
|||||||| | || ||||||||||
Sbjct 102911 AGCAACGATTGATATTTGCTGGTA 102934
Score = 129 bits (142), Expect = 8e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920
|||||| || || ||||| || ||||||||||||||||| || || || ||||| | ||
Sbjct 102079 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 102138
Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980
|||||| ||||| || | ||| || ||||| ||||||||||||||||| || |||||
Sbjct 102139 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 102198
Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004
|||| || | || ||||| |||||
Sbjct 102199 GCAAAGATTAATCTTTGCAGGTAA 102222
Score = 125 bits (138), Expect = 9e-24
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || || | |
Sbjct 102505 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAACCAT 102564
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
|||| || || || || | ||| || ||||||||||||||||||||||| || ||||
Sbjct 102565 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 102624
Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003
|||||||| | || ||||||||||
Sbjct 102625 AGCAACGATTGATATTTGCTGGTA 102648
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | ||
Sbjct 103079 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 103138
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || || || || | ||| || |||||||||||||||||||||||||| ||||||
Sbjct 103139 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 103198
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|||||| | || ||||||||||
Sbjct 103199 CAACGATTGATATTTGCTGGTA 103220
>seq520
Length=13491
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || |||||||| ||||| |||||| | || || || | ||
Sbjct 9608 ATGCAAATTTTCGTTAAGACTCTTACTGGCAAAACGATCACCTTAGAAGTAGAACCATCT 9549
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||||
Sbjct 9548 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 9489
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 9488 CAACGTCTGATTTTTGCTGGTA 9467
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || |||||||| ||||| |||||| | || || || | ||
Sbjct 10458 ATGCAAATTTTCGTTAAGACTCTTACTGGCAAAACGATCACCTTAGAAGTAGAACCATCT 10399
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||||
Sbjct 10398 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 10339
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 10338 CAACGTCTGATTTTTGCTGGTA 10317
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || || || || ||||| |||||| | || || || | ||
Sbjct 9324 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 9265
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||||
Sbjct 9264 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 9205
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 9204 CAACGTCTGATTTTTGCTGGTA 9183
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || || || || ||||| |||||| | || || || | ||
Sbjct 10174 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 10115
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||||
Sbjct 10114 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 10055
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 10054 CAACGTCTGATTTTTGCTGGTA 10033
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || |||||||||||||| || || | || || || | ||
Sbjct 9890 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 9831
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||
Sbjct 9830 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 9771
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|| || | || |||||||||||
Sbjct 9770 CAGCGTTTGATATTTGCTGGTAA 9748
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || |||||||||||||| || || | || || || | ||
Sbjct 10740 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 10681
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||
Sbjct 10680 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 10621
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|| || | || |||||||||||
Sbjct 10620 CAGCGTTTGATATTTGCTGGTAA 10598
Score = 100 bits (110), Expect = 4e-16
Identities = 93/118 (79%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945
|| || ||||| |||||| | || || || | || || ||||| || || | |||| |
Sbjct 11000 ACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGATACAATAGAGAATGTAAAAGGC 10941
Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTA 172003
|| ||||||||||| || || |||||||| ||||||||||| || |||||||||||||
Sbjct 10940 AAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAACGTCTGATTTTTGCTGGTA 10883
>seq182
Length=91112
Score = 122 bits (134), Expect = 1e-22
Identities = 318/484 (66%), Gaps = 6/484 (1%)
Strand=Plus/Plus
Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392
||||||| || | | |||| |||||| || ||||| | ||||| || || || || |
Sbjct 35258 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 35317
Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449
|| || ||||| || || ||||| || || ||||| | || || ||||| |
Sbjct 35318 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 35377
Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509
|||||||| | | || ||| ||||| || || || || |||||| | | ||||
Sbjct 35378 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGTC 35437
Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569
| | | |||||||||| | |||| ||| || ||| | | || || |||
Sbjct 35438 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 35496
Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629
| | || || | || | || || ||||||| |||||| ||
Sbjct 35497 --GAAAAATCGAGCAAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTCA 35554
Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689
|||||||||||||||| | ||||| ||| | || ||||| || | ||| || |||
Sbjct 35555 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATT 35614
Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749
|||| ||| |||||| |||| || || || || || ||||| |||| ||| ||||||
Sbjct 35615 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAAC 35674
Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809
| || || || || || || | | ||||| ||||| || | || |||| ||||| |
Sbjct 35675 GTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 35734
Query 195810 AACC 195813
||||
Sbjct 35735 AACC 35738
Score = 111 bits (122), Expect = 2e-19
Identities = 328/502 (65%), Gaps = 8/502 (2%)
Strand=Plus/Plus
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||| || || ||||| || || || ||||| || || ||||||| || | || |||
Sbjct 36481 ATCAATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 36540
Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492
| || ||| | || |||||| |||| | || || || | | ||||
Sbjct 36541 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 36594
Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552
||||||| | || || || ||||| || | ||| ||||| || | |||||
Sbjct 36595 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 36654
Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612
||||| || | || || | |||| ||||| || ||| |||||||||
Sbjct 36655 AAGAAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTT 36714
Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671
| ||||| ||||| || || | || || || ||||| ||||| | |||||| ||||
Sbjct 36715 TTCGAAGGCGAACGA-CCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGAC 36773
Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731
|| || || | || || | || || ||||| ||| | ||| |||||||| ||||
Sbjct 36774 CGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATTGACGT 36833
Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791
|| || ||| | ||||||| || || ||||| | | | ||||| | |||||
Sbjct 36834 GAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCAC 36893
Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851
|||||||||||| | || || || ||| || ||||| || ||| | | |||||
Sbjct 36894 CATTACCAATGACCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATGC 36953
Query 196852 GGAAAAGTACAGGGAAGAAGAC 196873
||||| || |||||| |||
Sbjct 36954 CGAAAAATATGCGGAAGAGGAC 36975
Score = 89.7 bits (98), Expect = 7e-13
Identities = 116/160 (73%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873
||| || ||||||||||| || ||||||||||| || ||| ||| |||||| | ||
Sbjct 35791 AACTGCTGCTGCAATTGCATACGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 35847
Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933
| | ||||| || ||||| ||||| || || | | || | |||||| |||| |
Sbjct 35848 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGACAATGGTGT 35907
Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973
|||||||| | ||||| ||||||||||||| | |||
Sbjct 35908 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 35947
>seq2483
Length=432
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 94 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 153
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || ||||||||||| || || |||||||| |||||
Sbjct 154 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 213
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 214 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 243
>seq80
Length=140786
Score = 96.9 bits (106), Expect = 5e-15
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||| |||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct 78283 AGGGATTCCACCTGATCAACAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 78342
Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051
||| | | |||||||| |||| |||||
Sbjct 78343 TACTTTGTCCGATTACAATATTCAGAAAGG 78372
>seq749
Length=4598
Score = 86.0 bits (94), Expect = 8e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978
|| || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||
Sbjct 7 TCTGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGAT 66
Query 171979 CAGCAACGACTTATTTTTGCTGGTA 172003
|||||||| || |||||||||||||
Sbjct 67 CAGCAACGTCTGATTTTTGCTGGTA 91
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657819293566240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |