Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq104 116 7e-21
seq520 109 1e-18
seq2483 100 5e-16
seq365 93.3 8e-14
>seq104
Length=129113
Score = 116 bits (128), Expect = 7e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || ||||| |||||||| || ||||||||||| || ||||| ||||| || |||||
Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
|||| | |||| || || || || | ||||||||||| ||||||||||| || ||
Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103
Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376
|| || || || ||||| ||||| | | | |||| |||
Sbjct 102102 AGTGTCTTCACGAATATCTGCATAATTTGAATAAATTAA 102064
>seq520
Length=13491
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|||| || || ||||| || || | ||||||||| || || ||||| |||||||||||
Sbjct 9742 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 9801
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 9802 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 9861
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 9862 CCAGTAAGAGTCTTAACAAAAATTTGCATT 9891
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|||| || || ||||| || || | ||||||||| || || ||||| |||||||||||
Sbjct 10592 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 10651
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 10652 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 10711
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 10712 CCAGTAAGAGTCTTAACAAAAATTTGCATT 10741
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||| ||||||||||| |||||| |
Sbjct 9185 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9244
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||||| || || ||||| || |||||
Sbjct 9245 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 9304
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 9305 GTCTTAACGAAAATTTGCATT 9325
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||| ||||||||||| |||||| |
Sbjct 10035 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10094
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||||| || || ||||| || |||||
Sbjct 10095 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 10154
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 10155 GTCTTAACGAAAATTTGCATT 10175
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||| ||||||||||| |||||| |
Sbjct 9469 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9528
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||||| || || ||||| || || ||
Sbjct 9529 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 9588
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 9589 GTCTTAACGAAAATTTGCATT 9609
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||| ||||||||||| |||||| |
Sbjct 10319 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10378
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||||| || || ||||| || || ||
Sbjct 10379 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 10438
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 10439 GTCTTAACGAAAATTTGCATT 10459
>seq2483
Length=432
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| || || || |||||||| || | |||||||| || || ||||| |||||||||||
Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || || |||||||||
Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCATT 93
>seq365
Length=37953
Score = 93.3 bits (102), Expect = 8e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || ||||| || || | |||||||| || || ||||||||||||||||| |||||
Sbjct 27818 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTC 27877
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
||| | |||| || ||||| || | || ||||| | || || ||||| || ||
Sbjct 27878 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTG 27937
Query 193338 AGCGTTTTTACAAATATTTGCATT 193361
|| || || ||||| |||||||||
Sbjct 27938 AGGGTCTTAACAAAAATTTGCATT 27961
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||||||||||||||| |||||| |
Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||| | || || ||||| || || ||
Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17536
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 17537 GTCTTAACGAAAATTTGCATT 17557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899595450145440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |