Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq104 127 4e-24
seq520 120 6e-22
seq365 120 6e-22
seq2483 109 1e-18
>seq104
Length=129113
Score = 127 bits (140), Expect = 4e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || ||||||||||| || ||||| |||||||| ||||||
Sbjct 103220 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 103161
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | ||| || | |||||||| | || || ||||| |||||||
Sbjct 103160 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 103101
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
||||||| | ||| |||||||||
Sbjct 103100 ATGTTTTCACAAAAATCTGCATT 103078
Score = 125 bits (138), Expect = 1e-23
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || |||||||| || || ||||| |||||||| ||||||
Sbjct 102648 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 102589
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||| ||||| || | |||||| | ||||||||| | || || ||||| |||||||
Sbjct 102588 TTTTCACATTTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTA 102529
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
||||||| | ||| ||||||||
Sbjct 102528 ATGTTTTCACAAAAATCTGCAT 102507
Score = 125 bits (138), Expect = 1e-23
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || ||||||||||| || ||||| |||||||| ||||||
Sbjct 102934 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 102875
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||| ||||| || | |||||| | |||||||| | || || ||||| |||||||
Sbjct 102874 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 102815
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
||||||| | ||| ||||||||
Sbjct 102814 ATGTTTTCACAAAAATCTGCAT 102793
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| |||||||||||||| || |||||||| || || ||||| ||||| || ||||||
Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|||| ||||| || | ||||| | ||| |||||||| || || ||||| |||||
Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
| ||| || | |||||||||||
Sbjct 102102 AGTGTCTTCACGAATATCTGCAT 102080
>seq520
Length=13491
Score = 120 bits (132), Expect = 6e-22
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| ||||||||||| || || | ||||||||| ||||| ||||| |||||||||||
Sbjct 9741 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 9800
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || |||||
Sbjct 9801 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 9860
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||| ||| || ||||||
Sbjct 9861 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 9891
Score = 120 bits (132), Expect = 6e-22
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| ||||||||||| || || | ||||||||| ||||| ||||| |||||||||||
Sbjct 10591 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 10650
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || |||||
Sbjct 10651 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 10710
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||| ||| || ||||||
Sbjct 10711 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 10741
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 9183 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9242
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| || ||||
Sbjct 9243 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 9302
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| || || ||||||
Sbjct 9303 GAGTCTTAACGAAAATTTGCATT 9325
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 9467 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9526
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| ||||| |
Sbjct 9527 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 9586
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| || || ||||||
Sbjct 9587 GAGTCTTAACGAAAATTTGCATT 9609
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 10033 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10092
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| || ||||
Sbjct 10093 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 10152
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| || || ||||||
Sbjct 10153 GAGTCTTAACGAAAATTTGCATT 10175
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 10317 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10376
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| ||||| |
Sbjct 10377 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 10436
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| || || ||||||
Sbjct 10437 GAGTCTTAACGAAAATTTGCATT 10459
Score = 87.8 bits (96), Expect = 4e-12
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 10883 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10942
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
||||||||| ||| | ||| || | ||||||||||| || || ||||| || ||
Sbjct 10943 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGT 11000
>seq365
Length=37953
Score = 120 bits (132), Expect = 6e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | |||||||| ||||| ||||| |||||||| || ||||||
Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| || | ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747
Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539
| ||||| | |||||||||||||||
Sbjct 29748 AGAGTTTTCACAAATATCTGCATTTT 29773
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| ||||| || |||||||| ||||| || ||
Sbjct 29297 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 29356
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | |||||||| || ||||| || ||||| ||||| || || |
Sbjct 29357 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 29416
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 29417 ACGTTTTCACAAATATCTGCAT 29438
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || || | |||||||| ||||| ||||||||||||||||| |||||
Sbjct 27818 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTC 27877
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||| ||||| ||| | ||| || | ||| ||||| | || |||||||| |||||
Sbjct 27878 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTG 27937
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
| || |||| ||| || ||||||
Sbjct 27938 AGGGTCTTAACAAAAATTTGCATT 27961
Score = 105 bits (116), Expect = 1e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| ||
Sbjct 28375 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 28434
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
|||||| ||||||||| ||| | ||| || | ||||||||| | || || |||||
Sbjct 28435 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 28494
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || | || |||| || || ||||||
Sbjct 28495 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 28525
Score = 104 bits (114), Expect = 5e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
|| || ||||||||||| || || | |||||||| ||||| |||||||| ||||| |||
Sbjct 22850 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 22909
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| ||| ||||| || | ||| || | ||||||||| | ||| || |||||
Sbjct 22910 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 22969
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||| || || ||||||
Sbjct 22970 CCAGTAAGGGTCTTAACGAAAATTTGCATT 22999
Score = 104 bits (114), Expect = 5e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
|| || ||||||||||| || || | |||||||| ||||| |||||||| ||||| |||
Sbjct 28656 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 28715
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| ||| ||||| || | ||| || | ||||||||| | ||| || |||||
Sbjct 28716 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 28775
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||| || || ||||||
Sbjct 28776 CCAGTAAGGGTCTTAACGAAAATTTGCATT 28805
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| |||||||| ||||| ||||||||
Sbjct 22297 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 22356
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| || || |
Sbjct 22357 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 22416
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 22417 GAGTCTTAACAAAAATTTGCATT 22439
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||||||||||||||| |||||
Sbjct 17415 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17474
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||| | || || ||||| || || |
Sbjct 17475 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17534
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| || || ||||||
Sbjct 17535 GAGTCTTAACGAAAATTTGCATT 17557
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| ||
Sbjct 17689 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 17748
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491
|||||| ||| ||||| ||| | ||| || | |||||||||
Sbjct 17749 TATTTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTC 17793
>seq2483
Length=432
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
|| || ||||||||||| || || | |||||||| ||||| ||||| |||||||||||
Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || |||||
Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||| || || ||||||
Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCATT 93
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984413879246700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |