Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq104 127 4e-24 seq520 120 6e-22 seq365 120 6e-22 seq2483 109 1e-18 >seq104 Length=129113 Score = 127 bits (140), Expect = 4e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 103220 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 103161 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | ||| || | |||||||| | || || ||||| ||||||| Sbjct 103160 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 103101 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 ||||||| | ||| ||||||||| Sbjct 103100 ATGTTTTCACAAAAATCTGCATT 103078 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 102648 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 102589 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | |||||| | ||||||||| | || || ||||| ||||||| Sbjct 102588 TTTTCACATTTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTA 102529 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||||| | ||| |||||||| Sbjct 102528 ATGTTTTCACAAAAATCTGCAT 102507 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 102934 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 102875 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | |||||| | |||||||| | || || ||||| ||||||| Sbjct 102874 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 102815 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||||| | ||| |||||||| Sbjct 102814 ATGTTTTCACAAAAATCTGCAT 102793 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||||||||| || |||||||| || || ||||| ||||| || |||||| Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| ||||| || | ||||| | ||| |||||||| || || ||||| ||||| Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||| || | ||||||||||| Sbjct 102102 AGTGTCTTCACGAATATCTGCAT 102080 >seq520 Length=13491 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | ||||||||| ||||| ||||| ||||||||||| Sbjct 9741 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 9800 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 9801 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 9860 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 9861 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 9891 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | ||||||||| ||||| ||||| ||||||||||| Sbjct 10591 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 10650 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 10651 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 10710 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 10711 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 10741 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 9183 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9242 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || |||| Sbjct 9243 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 9302 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 9303 GAGTCTTAACGAAAATTTGCATT 9325 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 9467 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9526 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| ||||| | Sbjct 9527 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 9586 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 9587 GAGTCTTAACGAAAATTTGCATT 9609 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 10033 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10092 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || |||| Sbjct 10093 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 10152 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 10153 GAGTCTTAACGAAAATTTGCATT 10175 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 10317 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10376 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| ||||| | Sbjct 10377 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 10436 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 10437 GAGTCTTAACGAAAATTTGCATT 10459 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 10883 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10942 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || || Sbjct 10943 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGT 11000 >seq365 Length=37953 Score = 120 bits (132), Expect = 6e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||||| ||||| ||||| |||||||| || |||||| Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 29748 AGAGTTTTCACAAATATCTGCATTTT 29773 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| ||||| || || Sbjct 29297 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 29356 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 29357 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 29416 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 29417 ACGTTTTCACAAATATCTGCAT 29438 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | |||||||| ||||| ||||||||||||||||| ||||| Sbjct 27818 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTC 27877 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| ||| | ||| || | ||| ||||| | || |||||||| ||||| Sbjct 27878 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTG 27937 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | || |||| ||| || |||||| Sbjct 27938 AGGGTCTTAACAAAAATTTGCATT 27961 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| || Sbjct 28375 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 28434 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 |||||| ||||||||| ||| | ||| || | ||||||||| | || || ||||| Sbjct 28435 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 28494 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || |||| || || |||||| Sbjct 28495 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 28525 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| |||||||| ||||| ||| Sbjct 22850 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 22909 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| || | ||| || | ||||||||| | ||| || ||||| Sbjct 22910 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 22969 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 22970 CCAGTAAGGGTCTTAACGAAAATTTGCATT 22999 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| |||||||| ||||| ||| Sbjct 28656 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 28715 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| || | ||| || | ||||||||| | ||| || ||||| Sbjct 28716 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 28775 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 28776 CCAGTAAGGGTCTTAACGAAAATTTGCATT 28805 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| |||||||| ||||| |||||||| Sbjct 22297 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 22356 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || || | Sbjct 22357 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 22416 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 22417 GAGTCTTAACAAAAATTTGCATT 22439 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||||||||||||||| ||||| Sbjct 17415 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17474 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||| | || || ||||| || || | Sbjct 17475 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17534 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 17535 GAGTCTTAACGAAAATTTGCATT 17557 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| || Sbjct 17689 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 17748 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491 |||||| ||| ||||| ||| | ||| || | ||||||||| Sbjct 17749 TATTTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTC 17793 >seq2483 Length=432 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCATT 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984413879246700