Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq365 105 6e-18
seq2483 104 2e-17
seq241 87.8 2e-12
>seq365
Length=37953
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || |
Sbjct 29770 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 29711
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || || || || || ||||| ||||| || |||||||||
Sbjct 29710 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 29651
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 29650 CAACGTCTGATTTTTGCTGGTAA 29628
Score = 102 bits (112), Expect = 7e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | |
Sbjct 29439 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 29380
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| | |||| |||||| ||||| |||||||||||||| || || || |||||
Sbjct 29379 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCA 29320
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || |||| ||||| ||
Sbjct 29319 ACAGCGGCTGATTTTTGCTGG 29299
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || || || ||||| || || | ||||| ||| | |
Sbjct 27960 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 27901
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||||| || ||| || || ||||| ||||||||||| || || ||||||
Sbjct 27900 GATACAATAGAAAATGTGAAAGGGAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 27841
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 27840 CAACGTTTGATATTTGCTGGTAA 27818
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 28524 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 28465
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || || |||||||| || || ||||||
Sbjct 28464 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28405
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 28404 CAACGTTTGATTTTTGCTGGTAA 28382
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 17556 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17497
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 17496 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17437
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 17436 CAACGTCTGATTTTTGCTGG 17417
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | |
Sbjct 22998 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 22939
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || || || |||||||| || || ||||||
Sbjct 22938 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 22879
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850
||||||||||| ||||| || || |||
Sbjct 22878 CAACGTTTGATTTTTGCTGGTAAGCAG 22852
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | |
Sbjct 28804 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 28745
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || || || |||||||| || || ||||||
Sbjct 28744 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28685
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850
||||||||||| ||||| || || |||
Sbjct 28684 CAACGTTTGATTTTTGCTGGTAAGCAG 28658
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || || || ||||| || || | ||||| ||| | |
Sbjct 28242 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACATTGGAAGTGGAACCATCT 28183
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || || || |||||||| || || ||||||
Sbjct 28182 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28123
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| || || || ||
Sbjct 28122 CAACGTTTGATTTTCGCTGGTAA 28100
>seq2483
Length=432
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | |
Sbjct 94 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 153
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||||| || ||| ||| || ||||| ||||| ||||| || || ||||||
Sbjct 154 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 213
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850
||||||||||| ||||| || || |||
Sbjct 214 CAACGTTTGATTTTTGCTGGTAAGCAG 240
>seq241
Length=74255
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182
|||| |||||||| | |||| || ||| || || ||||| | |||||| |||||
Sbjct 57353 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 57412
Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242
||||| || || ||||||||||| | |||| |||||||||| ||||| | ||| | |
Sbjct 57413 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 57472
Query 139243 TCTATAAT 139250
|| |||||
Sbjct 57473 TCAATAAT 57480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449868120459760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |