Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq365 105 6e-18 seq2483 104 2e-17 seq241 87.8 2e-12 >seq365 Length=37953 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || | Sbjct 29770 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 29711 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || || || ||||| ||||| || ||||||||| Sbjct 29710 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 29651 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| |||| ||||| || || Sbjct 29650 CAACGTCTGATTTTTGCTGGTAA 29628 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | | Sbjct 29439 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 29380 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| |||||| ||||| |||||||||||||| || || || ||||| Sbjct 29379 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCA 29320 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || |||| ||||| || Sbjct 29319 ACAGCGGCTGATTTTTGCTGG 29299 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 27960 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 27901 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| || ||| || || ||||| ||||||||||| || || |||||| Sbjct 27900 GATACAATAGAAAATGTGAAAGGGAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 27841 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 27840 CAACGTTTGATATTTGCTGGTAA 27818 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 28524 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 28465 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || || |||||||| || || |||||| Sbjct 28464 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28405 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 28404 CAACGTTTGATTTTTGCTGGTAA 28382 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 17556 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17497 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || ||||| ||||||||||| || || ||||| Sbjct 17496 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17437 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| |||| ||||| || Sbjct 17436 CAACGTCTGATTTTTGCTGG 17417 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | | Sbjct 22998 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 22939 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || || |||||||| || || |||||| Sbjct 22938 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 22879 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || ||| Sbjct 22878 CAACGTTTGATTTTTGCTGGTAAGCAG 22852 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | | Sbjct 28804 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 28745 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || || |||||||| || || |||||| Sbjct 28744 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28685 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || ||| Sbjct 28684 CAACGTTTGATTTTTGCTGGTAAGCAG 28658 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 28242 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACATTGGAAGTGGAACCATCT 28183 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || || |||||||| || || |||||| Sbjct 28182 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28123 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| || || || || Sbjct 28122 CAACGTTTGATTTTCGCTGGTAA 28100 >seq2483 Length=432 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | | Sbjct 94 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 153 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| || ||| ||| || ||||| ||||| ||||| || || |||||| Sbjct 154 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 213 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || ||| Sbjct 214 CAACGTTTGATTTTTGCTGGTAAGCAG 240 >seq241 Length=74255 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 |||| |||||||| | |||| || ||| || || ||||| | |||||| ||||| Sbjct 57353 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 57412 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||||| || || ||||||||||| | |||| |||||||||| ||||| | ||| | | Sbjct 57413 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 57472 Query 139243 TCTATAAT 139250 || ||||| Sbjct 57473 TCAATAAT 57480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868120459760