Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq134 345 3e-89
seq182 141 7e-28
seq205 111 1e-18
seq241 89.7 4e-12
>seq134
Length=108639
Score = 345 bits (382), Expect = 3e-89
Identities = 497/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 13350 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 13291
Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 13290 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 13231
Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 13230 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 13171
Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 13170 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 13111
Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 13110 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 13051
Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539
| |||||| | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 13050 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 12991
Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599
||| |||||| | | || ||| || || || ||| |||| || | |||||
Sbjct 12990 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 12931
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659
||| | || |||| ||| |||||||||| ||||||||| || || || ||||
Sbjct 12930 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 12871
Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 12870 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 12811
Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779
|||||| ||| || |||||||||||||| |||| || || || || | |||||| ||
Sbjct 12810 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 12751
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 12750 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 12691
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| |||||||| | || || || |||||||| |||||||||
Sbjct 12690 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 12650
Score = 114 bits (126), Expect = 1e-19
Identities = 196/282 (70%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 13819 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 13760
Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889
|| ||||||| ||| || || || | || |||||||| |||| || || || || ||
Sbjct 13759 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 13701
Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 13700 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 13641
Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009
||| | | || | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 13640 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 13581
Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051
| | ||||||| |||||| | | ||||| ||||||
Sbjct 13580 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 13539
>seq182
Length=91112
Score = 141 bits (156), Expect = 7e-28
Identities = 344/512 (67%), Gaps = 18/512 (4%)
Strand=Plus/Minus
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 35738 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 35679
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | ||||| |||||| ||||| || ||||| || | ||||||| | | ||||||||
Sbjct 35678 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 35619
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 35618 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 35559
Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604
|||| | ||| ||| |||| | | | | | || | ||||| | | |
Sbjct 35558 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 35503
Query 282605 ACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 35502 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 35443
Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722
|||| ||| | | || |||||||| || | ||||| ||||| | || | |
Sbjct 35442 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 35384
Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 282779
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 35383 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 35324
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || | ||||| || |||||||| |||||||||||||| |||||| | | || |
Sbjct 35323 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 35264
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATA 282871
| || ||| ||| || ||| || ||||||
Sbjct 35263 CAAC---ACTGAAAATTATTC--AATTCAATA 35237
>seq205
Length=84253
Score = 111 bits (122), Expect = 1e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 76029 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 75970
Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736
|||||| | | | || |||||||| |||| ||| || || |||||||||| |||
Sbjct 75969 GTAACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 75910
Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 75909 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 75866
>seq241
Length=74255
Score = 89.7 bits (98), Expect = 4e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 164595 TACAGGACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCA 164654
|||| ||| |||||||||||| | ||||||| | |||| || ||||| ||||| || | |
Sbjct 56332 TACAAGACGGTTTGGGAAATTTCCCAAAAATGCGTCATAGACATGGCCGCTGAAAGGGGA 56273
Query 164655 CCTTTTGTTGATCAAACACAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGA 164714
| || |||| ||| | ||| ||||| | |||| | | || | || ||| | |
Sbjct 56272 GCATTCATTGACCAATCCCAGTCGTTGAATATTCACATAGCCGAGCCGAATTATGCTAAA 56213
Query 164715 TTAAATTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTG 164774
|| | || | || || | |||| ||| ||||| ||||| || ||||| ||||||
Sbjct 56212 TTGACATCAATGCATTTCTACGGCTGGAAGAAGGGTCTGAAAACTGGGATGTACTATTTG 56153
Query 164775 AGATCTAAACCAGC 164788
||| | || |||||
Sbjct 56152 AGAACCAAGCCAGC 56139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740373039952692
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |