Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq132 86.0 1e-11
>seq132
Length=110507
Score = 86.0 bits (94), Expect = 1e-11
Identities = 202/300 (67%), Gaps = 5/300 (2%)
Strand=Plus/Minus
Query 143004 GATCCCGTCTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCC-CTT 143062
||||| || | || ||||||| || ||||||| || |||| | || ||||| ||
Sbjct 24966 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCACTG 24907
Query 143063 AACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTAT 143122
||| ||||| || | || ||||| ||| || || || |||||||| ||||| | |
Sbjct 24906 GACG-CAAATTCGATGGCGAAAATTTGCAATGGAATTTGTGATAATTTGTTAACAAGTTT 24848
Query 143123 AGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTAT 143182
|| |||| |||||| || || | | | |||||||| ||||||| | ||
Sbjct 24847 GGTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACAT 24788
Query 143183 GTGGGAACATCCTATTACAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCAT 143239
||||||||| || | || | ||||| || | | ||| |||| | | || ||||
Sbjct 24787 GTGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAA 24728
Query 143240 AGAAATAGAATGCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299
|||| | ||||| || ||| || || ||||| ||| || |||||||||||||
Sbjct 24727 AGAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 24668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903352003981120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |