Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq316 86.0 8e-12
seq123 86.0 8e-12
seq82 86.0 8e-12
seq24 86.0 8e-12
>seq316
Length=52316
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 35547 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 35488
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 35487 CCGGCCGGGGAG 35476
>seq123
Length=120185
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 45333 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 45274
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 45273 CCGGCCGGGGAG 45262
>seq82
Length=138979
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 70967 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 70908
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 70907 CCGGCCGGGGAG 70896
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 71664 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 71605
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 71604 CCGGCCGGGGAG 71593
>seq24
Length=220534
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 119546 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 119487
Query 8718 CCCGACGAGGAGCAG 8732
|| | || |||| ||
Sbjct 119486 CCGGCCGGGGAGAAG 119472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652802022344480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |