Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq134 363 5e-95 seq182 156 1e-32 seq104 156 1e-32 seq520 138 3e-27 seq365 138 3e-27 seq2483 125 2e-23 seq749 107 6e-18 seq80 93.3 1e-13 seq103 89.7 2e-12 seq1136 84.2 7e-11 >seq134 Length=108639 Score = 363 bits (402), Expect = 5e-95 Identities = 565/804 (70%), Gaps = 5/804 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||||| |||||||| || |||||||| || | || ||| | Sbjct 12651 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 12710 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || |||||||| || | || |||||| || ||||| || ||| Sbjct 12711 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 12770 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || ||||||| ||| | ||||||||||||| ||| ||||| | ||| Sbjct 12771 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 12830 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| |||||||| || ||| | | ||| ||| | || ||| Sbjct 12831 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 12890 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | ||||||| || || | || | || || || ||||| | ||| | Sbjct 12891 GATATGAAACATTGGCCATTCAAAATTATC---AACGATGGATCGAAACCTAAAATTCAA 12947 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || ||||| ||||| || || |||| ||| |||||||| | ||||| ||| Sbjct 12948 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTTA 13007 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||||| ||| ||||| ||||| || |||| || | ||||| || ||| Sbjct 13008 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAATT 13067 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || || |||||||| ||| | |||||| || || ||||| ||||| | ||| Sbjct 13068 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 13127 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || || |||||| | | || || || ||||| || || || |||||||| ||||| Sbjct 13128 TCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 13187 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||||| || | ||| | ||| |||| |||| || ||||| | |||||||||||| Sbjct 13188 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACT 13247 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 |||||||| || | | || | ||||| || |||||||| || || | || |||||| Sbjct 13248 TTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 13307 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || ||| | ||||| || || || || ||||| | || ||||| || || Sbjct 13308 GACACTCATTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCCGAG 13367 Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 |||||||| |||| || | || || | |||||| | ||| |||||||| | | Sbjct 13368 TTTAAGCG-CAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 13426 Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001 || || |||||||| || ||||| Sbjct 13427 CACAGCTTGTGAACGAGCGAAGCG 13450 Score = 107 bits (118), Expect = 6e-18 Identities = 191/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 |||||||||||| || || |||| ||||||| | |||||||| | ||||| Sbjct 13539 ATTGAAATTGATAGCCTCTACGAAGGCATTGATTTCTACACCACTATTACAAGAGCTCGC 13598 Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 || ||||| || | ||| || | || | | || |||| || || ||||||| Sbjct 13599 TTCGAAGAGTT--GAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 13656 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| ||| | |||| |||| ||||||| ||||| || || ||||||| Sbjct 13657 TTCGTGATGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGCGGTTCTA 13716 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | || ||||| |||||||| |||| | || ||||||||||| ||||||| | | Sbjct 13717 CTCGCATTCCTAAAGTTCAGAAGTTGTTGCAAGATTTTTTTAATGGGAAAGAACTTAACA 13776 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | || ||||| || ||||||||||| ||||| || Sbjct 13777 AAAGCATCAATCCCGACGAAGCTGTTGCCTATGGAGC 13813 Score = 96.9 bits (106), Expect = 1e-14 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 183570 TTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCT 183629 || ||||||||||| ||||| | | ||||| |||| | ||||||| || || || Sbjct 13447 TTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGATGACATGTCC 13388 Query 183630 TGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCT 183689 | || | || | ||||| || | | ||||| | | | | | || || || Sbjct 13387 TTCTTGTTCTTGCGCTTAAACTCGGCCACGAAATGATTTACCATGCGATTGTCGAAGTCC 13328 Query 183690 TCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATA 183749 |||||||| ||||| || || ||||| |||| || || ||||| || || ||||| || Sbjct 13327 TCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCATCTTCGATG 13268 Query 183750 TTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | ||||| || |||||||| ||||||||||| | ||||| Sbjct 13267 GTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAA 13227 Score = 84.2 bits (92), Expect = 7e-11 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320 |||| ||||| ||||||||||| || || || || | | ||| |||||| |||||| Sbjct 13815 CTGCTCCATAGGCAACAGCTTCGTCGGGATTGAT-GCTTTTGTTAAGTTCTTTCCCATTA 13757 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 ||||| ||| | || | |||| ||| ||||| | ||| ||||| || || || || Sbjct 13756 AAAAAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGAACCGCCCACCAAAACA 13697 Query 183381 ACTTCATCGAT-ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 ||||||| || | | |||| ||||||| | ||| | | ||||||| || || || Sbjct 13696 ACTTCATGAATCACTGCTTTGTCTAATTT-CGCATCACGAAGAGCTTTTTCTACTGGTTC 13638 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || ||| | || || || | |||||||| || | ||||| || | || | Sbjct 13637 CAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGT 13578 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAAT 183538 | || ||||| || | || | | |||||||||||| Sbjct 13577 GTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 13539 >seq182 Length=91112 Score = 156 bits (172), Expect = 1e-32 Identities = 328/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292 |||||| |||| | |||| |||||| ||||| ||||| |||||||| || || ||| Sbjct 35258 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 35317 Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349 || || || || || || ||||| ||| |||||| |||| || || | || | Sbjct 35318 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 35377 Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 ||||||| | || | | ||||| | |||||||| || ||||| ||||| | | ||| Sbjct 35378 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGT 35436 Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468 || | || || || | ||| | |||| ||| | || ||| | || ||| Sbjct 35437 CGAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT 35496 Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528 |||| | ||||| | || || || ||| |||||| | ||| || Sbjct 35497 GAAAAATCGAGC---AAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTC 35553 Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||||||||||| | |||||||| | |||||||| |||||||| || || ||| Sbjct 35554 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTAT 35613 Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 || || || ||| | |||| || | || || ||||| ||||| || ||||| || Sbjct 35614 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAA 35673 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 ||| || || |||||||| |||| |||||| || | |||||| | |||| || || Sbjct 35674 CGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAAC 35733 Query 349709 GAACC 349713 ||||| Sbjct 35734 GAACC 35738 >seq104 Length=129113 Score = 156 bits (172), Expect = 1e-32 Identities = 119/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 103218 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 103159 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 103158 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 103099 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| ||||||||||||||| Sbjct 103098 GTTTTCACAAAAATCTGCATT 103078 Score = 149 bits (164), Expect = 2e-30 Identities = 117/140 (84%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 102646 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 102587 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| ||| |||||||| ||||| | ||| | ||| ||||| |||| | Sbjct 102586 TTCACATTTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 102527 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||||||||| Sbjct 102526 GTTTTCACAAAAATCTGCAT 102507 Score = 145 bits (160), Expect = 2e-29 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 102932 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 102873 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 102872 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 102813 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||||||||| Sbjct 102812 GTTTTCACAAAAATCTGCAT 102793 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | || |||||||||||||| ||||| | || ||||| || Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || |||||||| Sbjct 102102 AGTGTCTTCACGAATATCTGCAT 102080 >seq520 Length=13491 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| || Sbjct 9185 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9244 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || |||||||| Sbjct 9245 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 9304 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 9305 GTCTTAACGAAAATTTGCATT 9325 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| || Sbjct 10035 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10094 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || |||||||| Sbjct 10095 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 10154 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 10155 GTCTTAACGAAAATTTGCATT 10175 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| || Sbjct 9469 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9528 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 9529 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 9588 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 9589 GTCTTAACGAAAATTTGCATT 9609 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| || Sbjct 10319 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10378 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 10379 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 10438 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 10439 GTCTTAACGAAAATTTGCATT 10459 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | ||| || ||||| || |||||||| |||||||| |||||||| Sbjct 9748 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 9807 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| || || | |||||||||||| ||||| | || | ||| ||||| || Sbjct 9808 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 9867 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 9868 AGAGTCTTAACAAAAATTTGCATT 9891 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | ||| || ||||| || |||||||| |||||||| |||||||| Sbjct 10598 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 10657 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| || || | |||||||||||| ||||| | || | ||| ||||| || Sbjct 10658 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 10717 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 10718 AGAGTCTTAACAAAAATTTGCATT 10741 Score = 114 bits (126), Expect = 4e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| || Sbjct 10885 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10944 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 10945 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGT 11000 >seq365 Length=37953 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17536 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 17537 GTCTTAACGAAAATTTGCATT 17557 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 22299 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22358 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 22359 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 22418 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 22419 GTCTTAACAAAAATTTGCATT 22439 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||| Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | || || ||||| ||||| || |||| || || || || Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 29748 AGAGTTTTCACAAATATCTGCATT 29771 Score = 132 bits (146), Expect = 1e-25 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 27533 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 27592 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| || || | ||| | || || || || || Sbjct 27593 TTTACATTCTCTATTGTATCAGATGGTTCCACCTCCAATGTGATGGTTTTGCCAGTGAGG 27652 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 27653 GTCTTGACAAAAATTTGCATT 27673 Score = 131 bits (144), Expect = 5e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||| Sbjct 22853 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 22912 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||| ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| Sbjct 22913 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 22972 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || ||||| |||||| Sbjct 22973 GTAAGGGTCTTAACGAAAATTTGCATT 22999 Score = 131 bits (144), Expect = 5e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||| Sbjct 28659 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 28718 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||| ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| Sbjct 28719 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 28778 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || ||||| |||||| Sbjct 28779 GTAAGGGTCTTAACGAAAATTTGCATT 28805 Score = 129 bits (142), Expect = 2e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || ||||||||||||||||| |||||||| Sbjct 27818 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTC 27877 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| || || | |||||||||||| ||||| | ||| | || || || || Sbjct 27878 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTG 27937 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 27938 AGGGTCTTAACAAAAATTTGCATT 27961 Score = 129 bits (142), Expect = 2e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||| || || | |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 28100 TTACCAGCGAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 28159 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| ||||| | |||||||||||| ||||| | ||| | || ||||| || Sbjct 28160 CCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTTCCAGTA 28219 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 28220 AGGGTCTTAACAAAAATTTGCATT 28243 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 28382 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 28441 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 28442 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 28501 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || || ||||| |||||| Sbjct 28502 AGAGTCTTAACGAAAATTTGCATT 28525 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 22583 CCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22642 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||| |||||||||||| ||||| | || | ||| ||||| || || Sbjct 22643 TTTACATT----CTCGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 22698 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 22699 GTCTTAACGAAAATTTGCATT 22719 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| || ||||| |||||||| || ||||| || | Sbjct 29299 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 29358 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 29359 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 29418 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 29419 GTTTTCACAAATATCTGCAT 29438 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || || Sbjct 17134 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17193 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| |||| | |||||||||||| ||||| | || | || || || ||||| Sbjct 17194 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17253 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 17254 GTCTTAACAAAAATTTGCATT 17274 Score = 100 bits (110), Expect = 9e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 17696 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 17755 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692 |||| ||||| || || | |||||||||||| ||||| Sbjct 17756 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTC 17793 >seq2483 Length=432 Score = 125 bits (138), Expect = 2e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| || |||||||| |||||||| |||||| Sbjct 239 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 180 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||| ||||| || || | |||||||||||| ||||| | || | ||| ||||| Sbjct 179 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 120 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || ||||| |||||| Sbjct 119 GTAAGGGTCTTAACGAAAATTTGCATT 93 >seq749 Length=4598 Score = 107 bits (118), Expect = 6e-18 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 89 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 30 Query 140658 TTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||| || || | |||||||||||| Sbjct 29 TTTACATTCTCTATTGTATCAGATGGTTC 1 >seq80 Length=140786 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| | Sbjct 78371 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 78312 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || || |||||||| ||||| ||| Sbjct 78311 TCAGTCGCTGTTGATCAGGTGGAATCCCT 78283 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || |||||||||||||| || ||||| | ||| | |||||| || || ||||| Sbjct 78236 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 78177 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 78176 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 78133 >seq103 Length=131296 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032 || || || |||||| | ||||| ||||| || || || |||||||| | ||| || | Sbjct 19819 ATTGGTGACAAATTTGCCAGTCGTCACGGTCAGAAGGGCACCATTGGGATGATATATCGT 19878 Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092 |||| | |||||||| | || || || | || || ||||| || ||||| || Sbjct 19879 CAAGAGGACATGCCATTCACGTGCGAAGGCATCACGCCGGACATTATAATCAATCCACAC 19938 Query 267093 GCTATTCCTAGTCGTATGACAATTGGTCAATT 267124 || ||||||||||| ||||| |||||||| || Sbjct 19939 GCAATTCCTAGTCGAATGACCATTGGTCATTT 19970 >seq1136 Length=1332 Score = 84.2 bits (92), Expect = 7e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 ||||||||||||||| | || ||||| ||||| | || || ||||| ||||| || ||| Sbjct 1332 TTATCCTGAATTTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTA 1273 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || ||||| ||||| ||||||||| Sbjct 1272 ATGGTTTTCCCAGTCAGAGTTTTGACAAATATCTGCATT 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515152630779326