Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq365 114 1e-20 seq520 95.1 1e-14 seq1136 82.4 7e-11 seq104 82.4 7e-11 >seq365 Length=37953 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | |||||||| ||||||||||| || Sbjct 29770 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 29711 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| || ||||| || || |||||||||||| Sbjct 29710 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 29651 Query 27108 CAGCGT 27113 || ||| Sbjct 29650 CAACGT 29645 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || | ||||| |||||||| || ||||| Sbjct 29438 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 29379 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||||||||||||||| ||||| |||||| Sbjct 29378 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 29319 Query 27108 CAGCG 27112 ||||| Sbjct 29318 CAGCG 29314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || ||||| | || || | ||||||||||| || Sbjct 27960 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 27901 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 27900 GATACAATAGAAAATGTGAAAGGGAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 27841 Query 27108 CAGCGTTTAATAT 27120 || ||||| |||| Sbjct 27840 CAACGTTTGATAT 27828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| |||||||| | || || | ||||| ||||| || Sbjct 17556 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17497 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 17496 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17437 Query 27108 CAGCGT 27113 || ||| Sbjct 17436 CAACGT 17431 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || || | || || | ||||||||||| || Sbjct 28242 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACATTGGAAGTGGAACCATCT 28183 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| || || || ||||| || ||||| |||||| Sbjct 28182 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28123 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| || | ||| || || ||||| Sbjct 28122 CAACGTTTGATTTTCGCTGGTAAGTAATTG 28093 >seq520 Length=13491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || | || ||| | ||||| ||||| || Sbjct 9890 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 9831 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 9830 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 9771 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTG 27137 |||||||| |||| || || || ||||| Sbjct 9770 CAGCGTTTGATATTTGCTGGTAAGTAATTG 9741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || | || ||| | ||||| ||||| || Sbjct 10740 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 10681 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 10680 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 10621 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTG 27137 |||||||| |||| || || || ||||| Sbjct 10620 CAGCGTTTGATATTTGCTGGTAAGTAATTG 10591 >seq1136 Length=1332 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | |||||||| ||||||||||| || Sbjct 1235 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 1294 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAA 27085 ||| | ||||| | || || |||||||| || || Sbjct 1295 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAA 1332 >seq104 Length=129113 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || || || | || || | ||||| ||||| || Sbjct 102507 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAACCATCA 102566 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || ||| ||||||||||| || |||||||| || || ||||| Sbjct 102567 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 102626 Query 27108 CAGCGTTTAATAT 27120 || || || |||| Sbjct 102627 CAACGATTGATAT 102639 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || || || | || || | ||||| || || || Sbjct 102793 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 102852 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || ||| ||||||||||| || |||||||| ||||| ||||| Sbjct 102853 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 102912 Query 27108 CAGCGTTTAATAT 27120 || || || |||| Sbjct 102913 CAACGATTGATAT 102925 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || || || | || || | ||||| || || || Sbjct 103079 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 103138 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || ||| ||||||||||| || |||||||| ||||| ||||| Sbjct 103139 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 103198 Query 27108 CAGCGTTTAATAT 27120 || || || |||| Sbjct 103199 CAACGATTGATAT 103211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434889901971840