Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2483 86.0 4e-12
seq365 86.0 4e-12
>seq2483
Length=432
Score = 86.0 bits (94), Expect = 4e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||||||||| ||||| || |||||||| || ||| | ||||| || | |
Sbjct 93 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 152
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | |||| | ||| ||||||| || ||||| || | || || |||||
Sbjct 153 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 212
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACA 23756
||| ||||| || ||||| || || ||
Sbjct 213 ACAACGTTTGATTTTTGCTGGTAAGCA 239
>seq365
Length=37953
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||| | || ||||||||||| || || |||||||| | |
Sbjct 29438 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 29379
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||||| ||||| || ||| ||||||||||| | || |||||||||
Sbjct 29378 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 29319
Query 23731 CAGCGTTTAATATTTGCCGG 23750
||||| | || ||||| ||
Sbjct 29318 CAGCGGCTGATTTTTGCTGG 29299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337988005622936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |