Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq241 143 4e-29 >seq241 Length=74255 Score = 143 bits (158), Expect = 4e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 || |||| || |||||||| | | ||| || || || | | ||||||||| ||| Sbjct 56109 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 56168 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| |||||| |||| |||||||||||||| ||||| ||| | |||| | || Sbjct 56169 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 56228 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 |||||||| |||||||||| |||||| ||| || ||||| ||||| || ||||| ||| Sbjct 56229 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 56288 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994 || | ||| | | ||||| | ||||||||||| || ||| Sbjct 56289 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 56330 Score = 134 bits (148), Expect = 2e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| ||| Sbjct 57613 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 57672 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || || || | | || || ||||| || |||||||||||||| || ||| ||| Sbjct 57673 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 57732 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 | |||||||| || | |||||| ||||| |||||||| || ||||| || | Sbjct 57733 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 57792 Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130 || || | ||||| ||||| | ||| Sbjct 57793 TATGTCTGCGTGCCAAGGTTCCAAATA 57819 Score = 114 bits (126), Expect = 2e-20 Identities = 186/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 ||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || | Sbjct 56764 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 56823 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402 ||||||| ||| || | ||| || || || || || |||||| || | || ||| Sbjct 56824 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAA 56882 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459 || ||| || || | ||||| || ||||| ||||| |||||||| | |||| | | Sbjct 56883 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 56942 Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| || ||||||||||| | | | |||||| ||||| || ||||| || || Sbjct 56943 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTAC 56998 Query 77519 TCCAATACCAATAGGTCTATG 77539 ||||||||||| |||| ||| Sbjct 56999 ACCAATACCAATTGGTCGATG 57019 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 || |||||||||||| || | || | |||||| || | ||| || || | ||| || Sbjct 56531 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 56590 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| || Sbjct 56591 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 56650 Query 77243 ACTATTTCTGAGACCAT 77259 |||||| ||||||| Sbjct 56651 CGAATTTCTCAGACCAT 56667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694623281826880