Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq241 143 4e-29
>seq241
Length=74255
Score = 143 bits (158), Expect = 4e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832
|| |||| || |||||||| | | ||| || || || | | ||||||||| |||
Sbjct 56109 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 56168
Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892
||||| |||||| |||| |||||||||||||| ||||| ||| | |||| | ||
Sbjct 56169 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 56228
Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952
|||||||| |||||||||| |||||| ||| || ||||| ||||| || ||||| |||
Sbjct 56229 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 56288
Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994
|| | ||| | | ||||| | ||||||||||| || |||
Sbjct 56289 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 56330
Score = 134 bits (148), Expect = 2e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
|||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| |||
Sbjct 57613 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 57672
Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043
||| || || || | | || || ||||| || |||||||||||||| || ||| |||
Sbjct 57673 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 57732
Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103
| |||||||| || | |||||| ||||| |||||||| || ||||| || |
Sbjct 57733 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 57792
Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130
|| || | ||||| ||||| | |||
Sbjct 57793 TATGTCTGCGTGCCAAGGTTCCAAATA 57819
Score = 114 bits (126), Expect = 2e-20
Identities = 186/261 (71%), Gaps = 10/261 (4%)
Strand=Plus/Plus
Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343
||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || |
Sbjct 56764 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 56823
Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402
||||||| ||| || | ||| || || || || || |||||| || | || |||
Sbjct 56824 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAA 56882
Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459
|| ||| || || | ||||| || ||||| ||||| |||||||| | |||| | |
Sbjct 56883 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 56942
Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518
|||| || ||||||||||| | | | |||||| ||||| || ||||| || ||
Sbjct 56943 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTAC 56998
Query 77519 TCCAATACCAATAGGTCTATG 77539
||||||||||| |||| |||
Sbjct 56999 ACCAATACCAATTGGTCGATG 57019
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182
|| |||||||||||| || | || | |||||| || | ||| || || | ||| ||
Sbjct 56531 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 56590
Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242
||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| ||
Sbjct 56591 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 56650
Query 77243 ACTATTTCTGAGACCAT 77259
|||||| |||||||
Sbjct 56651 CGAATTTCTCAGACCAT 56667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694623281826880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |