Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq365 98.7 2e-15 seq2483 95.1 3e-14 seq520 93.3 9e-14 seq104 86.0 1e-11 >seq365 Length=37953 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 28382 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 28441 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 28442 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 28501 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 28502 AGAGTCTTAACGAAAATTTGCATT 28525 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | ||| ||||| ||||| || || || || ||| Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747 Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103 | ||| || || ||||||||||||||| Sbjct 29748 AGAGTTTTCACAAATATCTGCATTTTC 29774 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| || || || ||||| || || || Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17536 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 17537 GTCTTAACGAAAATTTGCATT 17557 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| || ||||| || || || Sbjct 22853 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 22912 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 22913 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 22972 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 22973 GTAAGGGTCTTAACGAAAATTTGCATT 22999 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| || ||||| || || || Sbjct 28659 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 28718 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 28719 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 28778 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 28779 GTAAGGGTCTTAACGAAAATTTGCATT 28805 >seq2483 Length=432 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 239 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 180 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 179 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 120 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 119 GTAAGGGTCTTAACGAAAATTTGCATT 93 >seq520 Length=13491 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 9185 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9244 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 9245 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 9304 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 9305 GTCTTAACGAAAATTTGCATT 9325 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 9469 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9528 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 9529 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 9588 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 9589 GTCTTAACGAAAATTTGCATT 9609 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 10035 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10094 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 10095 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 10154 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 10155 GTCTTAACGAAAATTTGCATT 10175 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 10319 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10378 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 10379 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 10438 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 10439 GTCTTAACGAAAATTTGCATT 10459 >seq104 Length=129113 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | ||| || ||| ||||| || ||||| || || || ||| Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 102164 Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||||| | | ||||| ||||| || | ||| ||||| || || || || || || || Sbjct 102163 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 102104 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 | ||||| |||||||||||||| Sbjct 102103 AAGTGTCTTCACGAATATCTGCAT 102080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046668897724268