Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1834 96.9 7e-15
>seq1834
Length=61910
Score = 96.9 bits (106), Expect = 7e-15
Identities = 225/334 (67%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801
|| || || || |||||||| || ||| | || || | || | | ||||| |||
Sbjct 37508 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 37567
Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861
|| ||| | ||| ||| ||||||||||| || ||| ||| ||||||| || |
Sbjct 37568 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 37627
Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921
|| || | | || || || ||||||||||| || ||||| ||||| |||||
Sbjct 37628 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 37687
Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAA-GCGCAATATAATAC 281980
| ||| || || ||||| ||| | | |||||| |||||| || | | || ||
Sbjct 37688 GCAAGCTGAGCGACTTTCACTTCTCGTTTATCGTTGCGCTTGAAACACGTGA-ACAAAAC 37746
Query 281981 TTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CAT 282039
||| ||||| |||||| || |||||||| | || |||||||| || || | |||
Sbjct 37747 TTTACGTTGTCCAGGCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTATCCAT 37806
Query 282040 ACCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073
|| ||||||||| | || ||||| |||||
Sbjct 37807 GTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 37839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057763782377090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |