Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1313 120 4e-22
>seq1313
Length=81678
Score = 120 bits (132), Expect = 4e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| ||||
Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012
|| | ||||| ||||| | |||||||||||
Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 10483
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001
|| ||| ||||||||| || ||||| | || |||||||||||||||||| || |||
Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146
Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 54060
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 9145 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 9087
Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120
|| ||| | ||||| || || | ||| ||| ||||| |||||||| || ||
Sbjct 9086 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 9027
Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156
|| | | || || | ||||| |||||||| ||
Sbjct 9026 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 8991
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763
||||| ||||| |||||||| | || ||||||| | | ||||||| | |||
Sbjct 8100 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 8041
Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 8040 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 7981
Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883
| | ||||| |||||||||| |||||| ||||| | ||||| || | || | ||
Sbjct 7980 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 7921
Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912
|||||||| || ||||| || || | |||
Sbjct 7920 TCCAATTCGACAGTTGTCACACCTTGATA 7892
Score = 100 bits (110), Expect = 3e-16
Identities = 174/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Minus
Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 9995 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 9936
Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 9935 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 9876
Query 53476 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532
| |||| | | |||| || | ||||| ||||| | | |||||| || || ||
Sbjct 9875 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 9819
Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 9818 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 9762
Query 53593 AATAGGAT 53600
|| |||||
Sbjct 9761 AAAAGGAT 9754
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 10274 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 10215
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 10214 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 10155
Query 53269 ACTATTTCTAAGACCGTA 53286
|||||| ||||| ||
Sbjct 10154 CGAATTTCTCAGACCATA 10137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593688626186640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |