Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1313 125 9e-24
>seq1313
Length=81678
Score = 125 bits (138), Expect = 9e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794
||||| ||||| |||||||| | || ||||||| | | | ||||||| || |||
Sbjct 8100 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 8041
Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 8040 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 7981
Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914
| | ||||| |||||||||| |||||| ||||| | ||||| || |||| | ||
Sbjct 7980 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 7921
Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943
|||||||| || ||||| || || | |||
Sbjct 7920 TCCAATTCGACAGTTGTCACACCTTGATA 7892
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577
Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517
Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043
|| | ||||| ||||| | |||||||||||
Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 10483
Score = 113 bits (124), Expect = 6e-20
Identities = 129/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032
|| ||| ||| ||||| || ||||| | || |||||||||||||||||| || |||
Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146
Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 66091
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 9145 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 9087
Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142
|| ||| ||||||| || || | ||| ||| ||||| ||||||||
Sbjct 9086 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTT 9036
Score = 100 bits (110), Expect = 4e-16
Identities = 174/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Minus
Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 9995 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 9936
Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 9935 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 9876
Query 65507 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563
| |||| | | |||| || | ||||| ||||| | | |||||| || || ||
Sbjct 9875 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 9819
Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 9818 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 9762
Query 65624 AATAGGAT 65631
|| |||||
Sbjct 9761 AAAAGGAT 9754
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 10274 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 10215
Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 10214 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 10155
Query 65300 ACTATTTCTAAGACCGTA 65317
|||||| ||||| ||
Sbjct 10154 CGAATTTCTCAGACCATA 10137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658136246728120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |