Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1313 125 9e-24 >seq1313 Length=81678 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794 ||||| ||||| |||||||| | || ||||||| | | | ||||||| || ||| Sbjct 8100 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 8041 Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 8040 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 7981 Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 7980 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 7921 Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943 |||||||| || ||||| || || | ||| Sbjct 7920 TCCAATTCGACAGTTGTCACACCTTGATA 7892 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 || | ||||| ||||| | ||||||||||| Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 10483 Score = 113 bits (124), Expect = 6e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 || ||| ||| ||||| || ||||| | || |||||||||||||||||| || ||| Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 9145 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 9087 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 || ||| ||||||| || || | ||| ||| ||||| |||||||| Sbjct 9086 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTT 9036 Score = 100 bits (110), Expect = 4e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 9995 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 9936 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 9935 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 9876 Query 65507 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563 | |||| | | |||| || | ||||| ||||| | | |||||| || || || Sbjct 9875 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 9819 Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 9818 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 9762 Query 65624 AATAGGAT 65631 || ||||| Sbjct 9761 AAAAGGAT 9754 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 10274 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 10215 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 10214 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 10155 Query 65300 ACTATTTCTAAGACCGTA 65317 |||||| ||||| || Sbjct 10154 CGAATTTCTCAGACCATA 10137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658136246728120