Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3469 87.8 2e-12
seq3275 86.0 6e-12
>seq3469
Length=14404
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
||||||||| | ||||||||||| |||||||| || || || ||||| || |||||
Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | ||| |||||||| | ||| ||||| || | || | || || ||||||
Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| ||||| || ||||| |||||
Sbjct 7635 AGAGTTTTGACAAATATCTGCAT 7657
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | || || || || ||||| || || |||||||||||||| || ||
Sbjct 7184 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 7243
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
||||| | ||| | ||| || | ||||| || |||| || | ||| || || ||||
Sbjct 7244 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 7303
Query 139743 ACGTTTTTACGAATATTTGCAT 139764
||||||| || ||||| |||||
Sbjct 7304 ACGTTTTCACAAATATCTGCAT 7325
>seq3275
Length=16498
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | || || || || ||||| || || |||||||||||||| || ||
Sbjct 7268 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 7209
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
||||| | ||| | ||| || | ||||| || |||| || | ||| || || ||||
Sbjct 7208 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 7149
Query 139743 ACGTTTTTACGAATATTTGCAT 139764
||||||| || ||||| |||||
Sbjct 7148 ACGTTTTCACAAATATCTGCAT 7127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496036449845600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |