Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1313 140 5e-28 >seq1313 Length=81678 Score = 140 bits (154), Expect = 5e-28 Identities = 209/294 (71%), Gaps = 7/294 (2%) Strand=Plus/Minus Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278 |||||||||||||| | ||| | || ||||||||| | |||||||| |||||||| Sbjct 10042 GATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCC 9983 Query 79279 TTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAA 79338 |||||||| ||| ||| || || || || || || || || || || || ||| Sbjct 9982 TTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAA 9923 Query 79339 CTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAG--ATCTTGTG 79396 || ||||| || | ||||| |||||||| ||||| |||||||| | |||| | Sbjct 9922 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAG-- 9865 Query 79397 CTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 79456 ||||| | ||||| ||||| | | |||||| || || || |||||||| |||| Sbjct 9864 CTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACAC 9805 Query 79457 CAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510 ||||||| || |||| ||| | || ||||| |||| || | ||| ||||| Sbjct 9804 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---GAAAAGGAT 9754 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| |||| |||||||||||||| || | ||| | |||| |||| Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 78922 || | ||||| ||||| | ||||||||||| Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 10483 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 79852 TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACAC 79911 |||||| ||| ||||| || ||||| | ||| | |||||||||||||| | ||| ||| Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146 Query 79912 ATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 |||| ||||| ||||| || | | | || ||||| || |||||||| ||||| || Sbjct 9145 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 9086 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || ||| | ||||| || || | || ||| ||||| |||||||| || || Sbjct 9085 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 9026 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || | | || || | ||||| |||||||| || Sbjct 9025 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 8991 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||||||||||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 10274 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 10215 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || ||||||||||| || || ||||| || ||||| || |||| ||| || Sbjct 10214 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 10155 Query 79179 ACTATTTCTAAGACCGTA 79196 |||||| ||||| || Sbjct 10154 CGAATTTCTCAGACCATA 10137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718228909146520