Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq3275 102 6e-17
seq3469 100 2e-16
>seq3275
Length=16498
Score = 102 bits (112), Expect = 6e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| | |||||||||||||| || |||||||||||| || ||
Sbjct 8189 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 8130
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | |||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 8129 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 8070
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 8069 CCGGTAAGAGTCTTAACAAAAATTTGCAT 8041
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | ||||||||||| || || ||||||||| ||||| || |||||||
Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 8342 GTCTTAACGAAAATTTGCAT 8323
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 6817 AGAGTTTTCACAAATATCTGCATTTT 6792
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || |||||||||||| || || ||||| |
Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| |||||| || || || || ||||| || || ||
Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 7780 GTCTTAACGAAAATTTGCAT 7761
>seq3469
Length=14404
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | ||||||||||| || || ||||||||| ||||| || |||||||
Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 6109 GTCTTAACGAAAATTTGCAT 6128
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| | ||||||||||| || || |||||||||||| || ||
Sbjct 6263 AATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 6322
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | |||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 6323 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 6382
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 6383 CCGGTAAGAGTCTTAACAAAAATTTGCAT 6411
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| | || || ||| || || | ||||||||||| || |||
Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|||||||| ||||| || |||||
Sbjct 7635 AGAGTTTTGACAAATATCTGCAT 7657
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || |||||||||||| || || ||||| |
Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| |||||| || || || || ||||| || || ||
Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 6672 GTCTTAACGAAAATTTGCAT 6691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362159588335863
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |