Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq252 127 5e-24
seq3275 120 7e-22
seq3469 118 2e-21
seq273 105 2e-17
>seq252
Length=132080
Score = 127 bits (140), Expect = 5e-24
Identities = 116/144 (81%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| |||| || || ||||||||||| || ||||| ||||||||||| |||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 9764
Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| |||||||| | ||| || ||||| || |||||||| ||||| || |||||
Sbjct 9765 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 9824
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
|||||| || || |||||||||||
Sbjct 9825 AAGTGTCTTCACGAATATCTGCAT 9848
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | || |||||||| || || ||||| ||||| ||||| || |
Sbjct 8740 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8799
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || ||||| || | ||| || || || ||||| | |
Sbjct 8800 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8859
Query 104540 GTTTTTACAAATATCTGCATT 104560
||||| ||||| |||||||||
Sbjct 8860 GTTTTCACAAAAATCTGCATT 8880
>seq3275
Length=16498
Score = 120 bits (132), Expect = 7e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || ||||| || || || ||||| || || |||||
Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818
Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||||||||
Sbjct 6817 AGAGTTTTCACAAATATCTGCATTTT 6792
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| || |||||||| |
Sbjct 7266 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7207
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 7206 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7147
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 7146 GTTTTCACAAATATCTGCAT 7127
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | |||||||| || || |||||||| |||||||| || ||
Sbjct 8183 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 8124
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||||||||| |||| ||||| |||||||| || | || || || || || |||
Sbjct 8123 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 8064
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || || ||||| || ||||||
Sbjct 8063 AGAGTCTTAACAAAAATTTGCATT 8040
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | |||||||| || || |||||||| |||||||| || || ||
Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | ||||| |||||||| || | || || || || ||||||||
Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 7780 GTCTTAACGAAAATTTGCATT 7760
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | || ||||| || || ||||| ||||||||||| || || ||
Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || |||||
Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 8342 GTCTTAACGAAAATTTGCATT 8322
>seq3469
Length=14404
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| || |||||||| |
Sbjct 7186 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7245
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 7246 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7305
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 7306 GTTTTCACAAATATCTGCAT 7325
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| || || || ||||| || || || ||||| || || || ||
Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634
Query 104537 AGTGTTTTTACAAATATCTGCATTT 104561
|| ||||| ||||||||||||||||
Sbjct 7635 AGAGTTTTGACAAATATCTGCATTT 7659
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | || ||||| || || |||||||| |||||||| || ||
Sbjct 6269 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 6328
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||||||||| |||| ||||| |||||||| || | || || || || || |||
Sbjct 6329 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 6388
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || || ||||| || ||||||
Sbjct 6389 AGAGTCTTAACAAAAATTTGCATT 6412
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | || ||||| || || ||||| ||||||||||| || || ||
Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || |||||
Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 6109 GTCTTAACGAAAATTTGCATT 6129
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | |||||||| || || |||||||| |||||||| || || ||
Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | ||||| |||||||| || | || || || || ||||||||
Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 6672 GTCTTAACGAAAATTTGCATT 6692
>seq273
Length=128786
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | ||||||||| ||||| ||||| || ||||| |||||||| ||
Sbjct 111631 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 111572
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || || ||||| ||||| || || | || || || || ||||| ||
Sbjct 111571 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 111512
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 111511 GTCTTAACAAAAATTTGCATT 111491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151332855566644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |