Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq3221 98.7 9e-16
>seq3221
Length=395314
Score = 98.7 bits (108), Expect = 9e-16
Identities = 187/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562
||| ||||| ||||||||| ||| || | |||||| | ||| || | | | |||||
Sbjct 168421 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCCGTGTTGTCAAG--ATGAGAT-TCTTC 168477
Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618
||| | || || || || || || ||||| || || ||||| || || ||| |
Sbjct 168478 GACAATATTTGGCAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 168536
Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678
| || | ||||| | || ||| || ||||| | | || || || ||||| | ||| |
Sbjct 168537 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAAT 168596
Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738
| || |||| ||||||||||| | ||||||| |||||| | |||| ||| || || |
Sbjct 168597 CTGCATCTACAACGCCCGCGCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAG 168656
Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768
| || | ||| || ||||| || | ||||
Sbjct 168657 GTGCAATGCGACCATAGCAGCCGACAGGAA 168686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430031112957416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |