Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3221 98.7 9e-16 >seq3221 Length=395314 Score = 98.7 bits (108), Expect = 9e-16 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||||||| ||| || | |||||| | ||| || | | | ||||| Sbjct 168421 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCCGTGTTGTCAAG--ATGAGAT-TCTTC 168477 Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 ||| | || || || || || || ||||| || || ||||| || || ||| | Sbjct 168478 GACAATATTTGGCAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 168536 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || | ||||| | || ||| || ||||| | | || || || ||||| | ||| | Sbjct 168537 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAAT 168596 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | || |||| ||||||||||| | ||||||| |||||| | |||| ||| || || | Sbjct 168597 CTGCATCTACAACGCCCGCGCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAG 168656 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | || | ||| || ||||| || | |||| Sbjct 168657 GTGCAATGCGACCATAGCAGCCGACAGGAA 168686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430031112957416