Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2130 199 6e-47 seq3900 150 3e-32 seq650 149 1e-31 seq2153 147 3e-31 >seq2130 Length=253991 Score = 199 bits (220), Expect = 6e-47 Identities = 208/273 (76%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || || Sbjct 56940 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACGAAGCCTGCGAT 56881 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||||||||| || |||||| || || ||| | |||||||| | Sbjct 56880 TCGACGATTGGCACGTCGTGGTGGTGTAAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 56821 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| ||| Sbjct 56820 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 56761 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || ||||| || |||||||| | || ||||| |||||| | ||||| Sbjct 56760 ACACGCTAAGAGGAAAACTGTTACAGCCATGGATGTTGTTTATGCGTTGAAAAGACAAGG 56701 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | |||||||| || || |||||| ||| Sbjct 56700 CCGAACCATTTATGGGTTCGGTGGTTAATTTTC 56668 >seq3900 Length=9807 Score = 150 bits (166), Expect = 3e-32 Identities = 198/272 (73%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | || |||||||| ||||||||||| || || || || Sbjct 1900 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCGGCAATT 1959 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||||| || || ||| |||||||||| | | Sbjct 1960 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATCTATGAAGAAACT 2019 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||| || || | | ||| | | |||||| || ||| || Sbjct 2020 CGAGCTGTGTTGAA-ATCTTTTCTTGAAAATGTTGTTCGAGATGCTGTCACCTACTGTGA 2078 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | || || || ||| | |||||| | ||||||||||||||| | ||||| Sbjct 2079 ACATGCCAAAAGAAAAACCGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGG 2138 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | |||||||||||||| |||||| || Sbjct 2139 TCGAACCATTTATGGTTTTGGTGGTTAATTTT 2170 >seq650 Length=107839 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | | | | || ||||| || |||||||| || || ||||| || Sbjct 18057 GCTAAGCGTCACAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAACCAGCAATT 17998 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||||||||| || |||||| | || || || | |||||||||| Sbjct 17997 CGGCGTTTGGCTCGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 17938 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||| || | | | |||| | | |||||| | ||| ||| Sbjct 17937 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 17878 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||||||||| || | |||||| | || ||||| | |||||||||||| Sbjct 17877 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 17818 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||| || || || Sbjct 17817 CGAACTATTTACGGCTTCGG 17798 >seq2153 Length=47639 Score = 147 bits (162), Expect = 3e-31 Identities = 197/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||| || |||||||| || || || || Sbjct 4817 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 4876 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | |||||| | |||||||| | | Sbjct 4877 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGATTGATTTATGAAGAAACT 4936 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| ||| ||| | | |||||| || ||| ||| Sbjct 4937 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 4996 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| ||||| | |||||| | || ||||| |||||| | ||||| Sbjct 4997 CATGCGAAAAGGAAGACCGTCACGGCAATGGATGTAGTATATGCGTTGAAAAGACAAGGG 5056 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704 || | || ||||||||||| ||||| ||||| Sbjct 5057 CGAACCATCTATGGTTTTGGTGGTTAACTCTTC 5089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071137733999