Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1313 116 5e-21
seq203 82.4 1e-10
>seq1313
Length=81678
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637
Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577
Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517
Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 62199
|| | ||||| ||||| | |||||||||||
Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 10483
Score = 113 bits (124), Expect = 6e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188
|| ||| ||| ||||| || ||||| | || |||||||||||||||||| || |||
Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146
Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63247
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 9145 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 9087
Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307
|| ||| | ||||| || || | ||| ||| ||||| |||||||| || ||
Sbjct 9086 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 9027
Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343
|| | | || || | ||||| |||||||| ||
Sbjct 9026 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 8991
Score = 104 bits (114), Expect = 3e-17
Identities = 175/248 (71%), Gaps = 9/248 (4%)
Strand=Plus/Minus
Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 9995 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 9936
Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 9935 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 9876
Query 62663 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62719
| |||| | | |||| || | ||||| ||||| | | |||||| || |||||
Sbjct 9875 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 9819
Query 62720 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62779
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 9818 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 9762
Query 62780 AATAGGAT 62787
|| |||||
Sbjct 9761 AAAAGGAT 9754
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 10274 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 10215
Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 10214 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 10155
Query 62456 ACTATTTCTAAGACCGTA 62473
|||||| ||||| ||
Sbjct 10154 CGAATTTCTCAGACCATA 10137
>seq203
Length=339139
Score = 82.4 bits (90), Expect = 1e-10
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059
||| |||||| ||| |||||||| || || |||||||||||||| || ||||| |||||
Sbjct 24191 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24132
Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092
|| || || |||||| || || ||||||||
Sbjct 24131 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 24099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622912603069880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |