Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1313 120 4e-22 seq203 82.4 1e-10 >seq1313 Length=81678 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805 ||||| || || ||||||| | || ||||||| | | | ||||||| || ||| Sbjct 8100 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 8041 Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 8040 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 7981 Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 7980 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 7921 Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954 |||||||| || ||||| ||||| | ||| Sbjct 7920 TCCAATTCGACAGTTGTCACACCTTGATA 7892 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054 || | ||| | ||||| | ||||||||||| Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 10483 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 || ||| ||| ||||| || ||||| | || ||| |||||||||||||| || ||| Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 9145 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 9087 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 9086 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 9027 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || | | || || | ||||| |||||||| || Sbjct 9026 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 8991 Score = 100 bits (110), Expect = 4e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 9995 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 9936 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 9935 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 9876 Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574 | |||| || |||| || | ||||| ||||| | | |||||| || || || Sbjct 9875 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 9819 Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 9818 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 9762 Query 62635 AATAGGAT 62642 || ||||| Sbjct 9761 AAAAGGAT 9754 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 10274 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 10215 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 10214 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 10155 Query 62311 ACTATTTCTAAGACCGTA 62328 |||||| ||||| || Sbjct 10154 CGAATTTCTCAGACCATA 10137 >seq203 Length=339139 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 24191 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24132 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 | || || |||||| || ||||| ||||| Sbjct 24131 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 24099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633596809662800