Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3469 87.8 2e-12 seq3275 87.8 2e-12 seq316 84.2 2e-11 >seq3469 Length=14404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 7325 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7266 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 7265 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 7210 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 7209 TCAACAGCGGCTTATTTTTGCTGG 7186 >seq3275 Length=16498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 7127 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7186 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 7187 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 7242 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 7243 TCAACAGCGGCTTATTTTTGCTGG 7266 >seq316 Length=123628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| || Sbjct 46636 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 46577 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 ||| || ||||||||||||||| |||| Sbjct 46576 TACTTTGTCCGATTACAATATTCAGAAAG 46548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433304535695045