Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq252 105 1e-17 seq3469 100 5e-16 seq3275 100 5e-16 seq273 93.3 8e-14 >seq252 Length=132080 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 9765 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || ||||||||||||| || ||| ||||| | || || |||||||| || Sbjct 9766 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 9825 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| |||||||||||||| || Sbjct 9826 AGTGTCTTCACGAATATCTGCATAAT 9851 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || || |||| || ||||||||||| ||||| |||||||| || Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 8740 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8799 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || || | || ||||||||||| ||||| |||||||| || | Sbjct 8800 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8859 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || || || ||||||||| Sbjct 8860 GTTTTCACAAAAATCTGCATT 8880 >seq3469 Length=14404 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 6543 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 6602 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || |||||||||||| || || |||||| Sbjct 6603 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 6662 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 6663 CCAGTAAGGGTCTTAACGAAAATTTGCATT 6692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 7514 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 7573 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || | ||||||| | ||| ||||||| || |||||||| || || Sbjct 7574 ACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGT 7633 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| |||||||||||| Sbjct 7634 CAGAGTTTTGACAAATATCTGCATT 7658 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | ||| || || |||||||| |||||||| || || || || Sbjct 6268 CTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 6327 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || ||| || || || | || |||||||||||||||||| ||||| || || Sbjct 6328 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 6387 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || || |||||| Sbjct 6388 AAGAGTCTTAACAAAAATTTGCATT 6412 >seq3275 Length=16498 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 7909 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 7850 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || |||||||||||| || || |||||| Sbjct 7849 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 7790 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 7789 CCAGTAAGGGTCTTAACGAAAATTTGCATT 7760 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 8184 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 8125 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || ||| || || || | || |||||||||||||||||| ||||| || || Sbjct 8124 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 8065 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || || |||||| Sbjct 8064 AAGAGTCTTAACAAAAATTTGCATT 8040 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 6938 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 6879 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||| | | ||| ||||||| || |||||||| || || Sbjct 6878 ACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 6819 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || || || |||||||||||| Sbjct 6818 CAGAGTTTTCACAAATATCTGCATT 6794 >seq273 Length=128786 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||||| || || ||||| || ||||| ||||||||||| | Sbjct 111631 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 111572 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| | || || | || ||| |||||||| ||||||||||| || || ||| Sbjct 111571 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 111512 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 111511 GTCTTAACAAAAATTTGCATT 111491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921571215395960