Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq252 105 1e-17
seq3469 100 5e-16
seq3275 100 5e-16
seq273 93.3 8e-14
>seq252
Length=132080
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | |||||| || || || |||||||||||||| || ||||| ||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 9765
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || ||||||||||||| || ||| ||||| | || || |||||||| ||
Sbjct 9766 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 9825
Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464
|| ||||| |||||||||||||| ||
Sbjct 9826 AGTGTCTTCACGAATATCTGCATAAT 9851
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || || || || |||| || ||||||||||| ||||| |||||||| ||
Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| || || || || ||||||||
Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 8740 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8799
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||||||||||| ||||| |||||||| || |
Sbjct 8800 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8859
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| || || || |||||||||
Sbjct 8860 GTTTTCACAAAAATCTGCATT 8880
>seq3469
Length=14404
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
||||||| || || || || | | |||||| || |||||||| |||||||| || ||
Sbjct 6543 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 6602
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || | || || || || || || | || |||||||||||| || || ||||||
Sbjct 6603 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 6662
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| ||||| || ||||||
Sbjct 6663 CCAGTAAGGGTCTTAACGAAAATTTGCATT 6692
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 7514 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 7573
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || | ||||||| | ||| ||||||| || |||||||| || ||
Sbjct 7574 ACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGT 7633
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| || ||||| ||||||||||||
Sbjct 7634 CAGAGTTTTGACAAATATCTGCATT 7658
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || | | ||| || || |||||||| |||||||| || || || ||
Sbjct 6268 CTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 6327
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| || || ||| || || || | || |||||||||||||||||| ||||| || ||
Sbjct 6328 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 6387
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| ||||| || || || ||||||
Sbjct 6388 AAGAGTCTTAACAAAAATTTGCATT 6412
>seq3275
Length=16498
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
||||||| || || || || | | |||||| || |||||||| |||||||| || ||
Sbjct 7909 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 7850
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || | || || || || || || | || |||||||||||| || || ||||||
Sbjct 7849 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 7790
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| ||||| || ||||||
Sbjct 7789 CCAGTAAGGGTCTTAACGAAAATTTGCATT 7760
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || | | |||||| || |||||||| |||||||| || || || ||
Sbjct 8184 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 8125
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| || || ||| || || || | || |||||||||||||||||| ||||| || ||
Sbjct 8124 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 8065
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| ||||| || || || ||||||
Sbjct 8064 AAGAGTCTTAACAAAAATTTGCATT 8040
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 6938 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 6879
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || || ||||| | | ||| ||||||| || |||||||| || ||
Sbjct 6878 ACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 6819
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| || || || ||||||||||||
Sbjct 6818 CAGAGTTTTCACAAATATCTGCATT 6794
>seq273
Length=128786
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||||| || || ||||| || ||||| ||||||||||| |
Sbjct 111631 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 111572
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || ||| | || || | || ||| |||||||| ||||||||||| || || |||
Sbjct 111571 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 111512
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 111511 GTCTTAACAAAAATTTGCATT 111491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921571215395960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |