Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3469 102 2e-16 seq3275 98.7 2e-15 seq1834 91.5 3e-13 seq273 86.0 1e-11 >seq3469 Length=14404 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| | | || | ||| ||||| || || || || ||||||||| Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||||||| Sbjct 7635 AGAGTTTTGACAAATATCTGCATT 7658 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||| || ||| ||| ||||| ||||||||||| ||||| || Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 6109 GTCTTAACGAAAATTTGCATT 6129 >seq3275 Length=16498 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| ||| Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 6817 AGAGTTTTCACAAATATCTGCATT 6794 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||| || ||| ||| ||||| ||||||||||| ||||| || Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 8342 GTCTTAACGAAAATTTGCATT 8322 >seq1834 Length=61910 Score = 91.5 bits (100), Expect = 3e-13 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 ||||||||||||||| || || ||| || || | || | ||||| | |||| Sbjct 37585 GTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATAATGGTGCTCATCAGACT 37644 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 ||||||| |||||||| || ||| || |||||| |||| | ||| || || || Sbjct 37645 GACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCAGCAAGCTGAGCGACTTT 37704 Query 325513 CACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAG 325568 ||| || |||| | ||||||||||| | |||| | | ||||| ||||| || Sbjct 37705 CACTTC--TCGTTTATCGTTGCGCTTGAAACACGTGAACAAA--ACTTTACGTTGTCCAG 37760 Query 325569 GTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CGTACCGCGAGAACAAA 325627 | || || |||||||| | ||| |||||||| || || || | | || ||||||| Sbjct 37761 GCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTATCCATGTTGC-TGAACAAA 37819 Query 325628 ATAAGTTCCTTGTCGATGAA 325647 || | || ||||||||||| Sbjct 37820 ATCAACTCTTTGTCGATGAA 37839 >seq273 Length=128786 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || |||||||||||||| |||| || ||||| || ||||| || || ||| Sbjct 111631 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 111575 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||| || || | || ||| | ||| ||||| | |||||| || ||||| || Sbjct 111574 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTT 111515 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || |||||| Sbjct 111514 AGGGTCTTAACAAAAATTTGCATT 111491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179587247067354