Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq513 102 9e-17
seq462 96.9 4e-15
seq348 96.9 4e-15
seq61 96.9 4e-15
>seq513
Length=320759
Score = 102 bits (112), Expect = 9e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|| |||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||
Sbjct 200048 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 199989
Query 57056 ACTCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||||
Sbjct 199988 ACTCACCACTATACTACCGAGGAT 199965
>seq462
Length=117134
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 45633 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 45692
Query 57067 TACTACCGAGGATTGA 57082
|||||||||||| |||
Sbjct 45693 TACTACCGAGGACTGA 45708
>seq348
Length=122565
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 50318 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 50259
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 50258 TACTACCGAGGAT 50246
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 51015 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 50956
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 50955 TACTACCGAGGAT 50943
>seq61
Length=144527
Score = 96.9 bits (106), Expect = 4e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 56986 TTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGAC 57045
|||| | ||| || ||| |||| |||| | |||||||||| |||| ||||||||||
Sbjct 121624 TTAAATTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 121565
Query 57046 AGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||| |||||||||||||||||||||||||
Sbjct 121564 AGGCGGGAATACTCACCACTATACTACCGAGGA 121532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543182631319120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |