Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3275 107 1e-18 seq3469 102 6e-17 >seq3275 Length=16498 Score = 107 bits (118), Expect = 1e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| | |||||||| ||||| || ||||||||||||||| || Sbjct 8189 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 8130 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||||||| | ||||| ||||| |||||| || ||||| || ||||| Sbjct 8129 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 8070 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 8069 CCGGTAAGAGTCTTAACAAAAATTTGCAT 8041 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| || || || ||||||||| || || || ||||||| | Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 8342 GTCTTAACGAAAATTTGCAT 8323 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| ||||| || ||||||||||||||| || ||||| | | Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| || ||||| |||||| || || || || ||||| || || || Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 7780 GTCTTAACGAAAATTTGCAT 7761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||| ||||| ||| ||||||||| || || || |||||| Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || ||| || || | ||||||||||| || ||| Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| ||||| || ||||| || Sbjct 6817 AGAGTTTTCACAAATATCTGCATTTT 6792 >seq3469 Length=14404 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| | |||||||| || || || ||||||||||||||| || Sbjct 6263 AATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 6322 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||||||| | ||||| ||||| |||||| || ||||| || ||||| Sbjct 6323 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 6382 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 6383 CCGGTAAGAGTCTTAACAAAAATTTGCAT 6411 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| || || || ||||||||| || || || ||||||| | Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 6109 GTCTTAACGAAAATTTGCAT 6128 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| ||||| || ||||||||||||||| || ||||| | | Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| || ||||| |||||| || || || || ||||| || || || Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 6672 GTCTTAACGAAAATTTGCAT 6691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357372647558255