Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq3275 107 1e-18
seq3469 102 6e-17
>seq3275
Length=16498
Score = 107 bits (118), Expect = 1e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| | |||||||| ||||| || ||||||||||||||| ||
Sbjct 8189 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 8130
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 8129 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 8070
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 8069 CCGGTAAGAGTCTTAACAAAAATTTGCAT 8041
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| || || || ||||||||| || || || ||||||| |
Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 8342 GTCTTAACGAAAATTTGCAT 8323
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || ||||||||||||||| || ||||| | |
Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| || ||||| |||||| || || || || ||||| || || ||
Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 7780 GTCTTAACGAAAATTTGCAT 7761
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|||||||| ||||| || ||||| ||
Sbjct 6817 AGAGTTTTCACAAATATCTGCATTTT 6792
>seq3469
Length=14404
Score = 102 bits (112), Expect = 6e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| | |||||||| || || || ||||||||||||||| ||
Sbjct 6263 AATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 6322
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 6323 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 6382
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 6383 CCGGTAAGAGTCTTAACAAAAATTTGCAT 6411
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| || || || ||||||||| || || || ||||||| |
Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 6109 GTCTTAACGAAAATTTGCAT 6128
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || ||||||||||||||| || ||||| | |
Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| || ||||| |||||| || || || || ||||| || || ||
Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 6672 GTCTTAACGAAAATTTGCAT 6691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357372647558255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |