Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3935 150 7e-31 seq867 125 3e-23 seq3469 122 3e-22 seq3275 122 3e-22 seq252 120 1e-21 seq273 100 1e-15 >seq3935 Length=392680 Score = 150 bits (166), Expect = 7e-31 Identities = 271/393 (69%), Gaps = 5/393 (1%) Strand=Plus/Plus Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 |||||||| | || ||||| || | || | ||| | || |||||||| ||||| Sbjct 361670 ATTCAAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATG 361729 Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 || ||| | || ||||| ||||| || ||| ||| | || | |||| ||||| Sbjct 361730 GTG-TTAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGC 361788 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 |||||||||||||| || ||||| || ||| | || || || || || ||||| || || Sbjct 361789 CGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGG 361848 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 | ||| ||||||| |||||| | || || || || ||||| ||||| ||||| | || Sbjct 361849 AACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGC 361908 Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 |||||||| | | ||| | | ||| |||| || | ||||||| |||| Sbjct 361909 TTATGGACTTG---ATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGG 361965 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 ||| || ||| |||| ||| | | | || |||||||| | ||||| || ||| | Sbjct 361966 TGGTGGTACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTC 362025 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||| |||||| |||||| | || ||||| || Sbjct 362026 TACCGCTGGTGACACTCATTTGGGTGGTGAGGA 362058 >seq867 Length=98256 Score = 125 bits (138), Expect = 3e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278 ||| ||||||| ||| || |||| |||||||||||| | |||||| | ||||| Sbjct 53591 TAACGGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAAT 53532 Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338 |||||||| || || ||| | || ||| | |||| || | || ||||| Sbjct 53531 GAAAGAAATTGCCGAGGCTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCC 53472 Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398 ||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||| | Sbjct 53471 AGCTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGTACCATTGCTGGTCT 53412 Query 451399 AAATGTTCTTCGAATTATTAATGAACC 451425 |||||| ||||||| || || ||||| Sbjct 53411 TAATGTTGTTCGAATCATCAACGAACC 53385 >seq3469 Length=14404 Score = 122 bits (134), Expect = 3e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| |||| Sbjct 6692 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 6633 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 6632 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 6573 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 6572 ACAACGTTTGATTTT 6558 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 6412 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 6353 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 6352 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 6293 Query 391169 ACAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 6292 GCAACGTTTGATTTT 6278 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || || || ||||| || || | || || ||| |||| Sbjct 6129 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 6070 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||| || |||||||| || ||||| Sbjct 6069 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 6010 Query 391169 ACAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 6009 GCAACGTTTGATTTT 5995 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| ||||| || ||||| |||||||| || || ||| | || Sbjct 7658 AATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTC 7599 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || |||||||| ||||| || |||||||| || ||||| Sbjct 7598 AGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 7539 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | ||||| Sbjct 7538 ACAACGTCTGATTTT 7524 >seq3275 Length=16498 Score = 122 bits (134), Expect = 3e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| |||| Sbjct 7760 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7819 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 7820 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 7879 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 7880 ACAACGTTTGATTTT 7894 Score = 104 bits (114), Expect = 9e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| |||||||| ||||| |||||||| || || ||| | || Sbjct 6794 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 6853 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || |||||||| ||||| || |||||||| || ||||| Sbjct 6854 TGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 6913 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | ||||| Sbjct 6914 ACAACGTCTGATTTT 6928 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 8040 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 8099 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 8100 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 8159 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 8160 ACAACGTTTGATTTT 8174 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || || || ||||| || || | || || ||| |||| Sbjct 8322 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 8381 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||| || |||||||| || ||||| Sbjct 8382 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 8441 Query 391169 ACAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 8442 GCAACGTTTGATTTT 8456 >seq252 Length=132080 Score = 120 bits (132), Expect = 1e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||| || ||||| ||||| |||||||| || || || |||||| || Sbjct 9851 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 9792 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | ||| ||| | ||||| |||||||| ||||||||||| |||||||||||| Sbjct 9791 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 9732 Query 391167 CAACAACGTTTAATTTTCTCAGGGAA 391192 || ||| | ||||| || |||| || Sbjct 9731 CAGCAAAGATTAATCTTTGCAGGTAA 9706 Score = 104 bits (114), Expect = 9e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || |||||| | ||||| ||||| || || | || || || |||| Sbjct 8880 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 8821 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| |||||||||||||||||||| ||||| |||||||| Sbjct 8820 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 8761 Query 391169 ACAACGTTTAATTTT 391183 ||||| || || || Sbjct 8760 GCAACGATTGATATT 8746 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| | ||||| ||||| || || | || || || |||| Sbjct 9166 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9107 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| |||||||||||||||||||| ||||| |||||||| Sbjct 9106 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9047 Query 391170 CAACGTTTAATTTT 391183 ||||| || || || Sbjct 9046 CAACGATTGATATT 9033 >seq273 Length=128786 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 111491 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 111550 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||| | | ||| || |||||||||||||| ||||||||||| ||||| Sbjct 111551 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 111610 Query 391169 ACAACGTTTAATTTT 391183 ||| ||| | ||||| Sbjct 111611 ACAGCGTCTGATTTT 111625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975605930377844