Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3935 150 7e-31
seq867 125 3e-23
seq3469 122 3e-22
seq3275 122 3e-22
seq252 120 1e-21
seq273 100 1e-15
>seq3935
Length=392680
Score = 150 bits (166), Expect = 7e-31
Identities = 271/393 (69%), Gaps = 5/393 (1%)
Strand=Plus/Plus
Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264
|||||||| | || ||||| || | || | ||| | || |||||||| |||||
Sbjct 361670 ATTCAAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATG 361729
Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323
|| ||| | || ||||| ||||| || ||| ||| | || | |||| |||||
Sbjct 361730 GTG-TTAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGC 361788
Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383
|||||||||||||| || ||||| || ||| | || || || || || ||||| || ||
Sbjct 361789 CGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGG 361848
Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443
| ||| ||||||| |||||| | || || || || ||||| ||||| ||||| | ||
Sbjct 361849 AACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGC 361908
Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503
|||||||| | | ||| | | ||| |||| || | ||||||| ||||
Sbjct 361909 TTATGGACTTG---ATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGG 361965
Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563
||| || ||| |||| ||| | | | || |||||||| | ||||| || ||| |
Sbjct 361966 TGGTGGTACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTC 362025
Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
||| |||||| |||||| | || ||||| ||
Sbjct 362026 TACCGCTGGTGACACTCATTTGGGTGGTGAGGA 362058
>seq867
Length=98256
Score = 125 bits (138), Expect = 3e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278
||| ||||||| ||| || |||| |||||||||||| | |||||| | |||||
Sbjct 53591 TAACGGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAAT 53532
Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338
|||||||| || || ||| | || ||| | |||| || | || |||||
Sbjct 53531 GAAAGAAATTGCCGAGGCTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCC 53472
Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398
||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||| |
Sbjct 53471 AGCTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGTACCATTGCTGGTCT 53412
Query 451399 AAATGTTCTTCGAATTATTAATGAACC 451425
|||||| ||||||| || || |||||
Sbjct 53411 TAATGTTGTTCGAATCATCAACGAACC 53385
>seq3469
Length=14404
Score = 122 bits (134), Expect = 3e-22
Identities = 108/135 (80%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 6692 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 6633
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 6632 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 6573
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 6572 ACAACGTTTGATTTT 6558
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || || ||| ||||
Sbjct 6412 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 6353
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 6352 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 6293
Query 391169 ACAACGTTTAATTTT 391183
|||||||| |||||
Sbjct 6292 GCAACGTTTGATTTT 6278
Score = 91.5 bits (100), Expect = 6e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 6129 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 6070
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||| || |||||||| || |||||
Sbjct 6069 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 6010
Query 391169 ACAACGTTTAATTTT 391183
|||||||| |||||
Sbjct 6009 GCAACGTTTGATTTT 5995
Score = 91.5 bits (100), Expect = 6e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || ||||| ||||| || ||||| |||||||| || || ||| | ||
Sbjct 7658 AATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTC 7599
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | ||||| | | || |||||||| ||||| || |||||||| || |||||
Sbjct 7598 AGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 7539
Query 391169 ACAACGTTTAATTTT 391183
||||||| | |||||
Sbjct 7538 ACAACGTCTGATTTT 7524
>seq3275
Length=16498
Score = 122 bits (134), Expect = 3e-22
Identities = 108/135 (80%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 7760 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7819
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 7820 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 7879
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 7880 ACAACGTTTGATTTT 7894
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || ||||| |||||||| ||||| |||||||| || || ||| | ||
Sbjct 6794 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 6853
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||| | |||||| | | || |||||||| ||||| || |||||||| || |||||
Sbjct 6854 TGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 6913
Query 391169 ACAACGTTTAATTTT 391183
||||||| | |||||
Sbjct 6914 ACAACGTCTGATTTT 6928
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || || ||| ||||
Sbjct 8040 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 8099
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 8100 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 8159
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 8160 ACAACGTTTGATTTT 8174
Score = 91.5 bits (100), Expect = 6e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 8322 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 8381
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||| || |||||||| || |||||
Sbjct 8382 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 8441
Query 391169 ACAACGTTTAATTTT 391183
|||||||| |||||
Sbjct 8442 GCAACGTTTGATTTT 8456
>seq252
Length=132080
Score = 120 bits (132), Expect = 1e-21
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106
|| ||| | || ||||| || ||||| ||||| |||||||| || || || |||||| ||
Sbjct 9851 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 9792
Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166
|| || | ||| ||| | ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 9791 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 9732
Query 391167 CAACAACGTTTAATTTTCTCAGGGAA 391192
|| ||| | ||||| || |||| ||
Sbjct 9731 CAGCAAAGATTAATCTTTGCAGGTAA 9706
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| || |||||| | ||||| ||||| || || | || || || ||||
Sbjct 8880 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 8821
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 8820 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 8761
Query 391169 ACAACGTTTAATTTT 391183
||||| || || ||
Sbjct 8760 GCAACGATTGATATT 8746
Score = 98.7 bits (108), Expect = 4e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || |||||| | ||||| ||||| || || | || || || ||||
Sbjct 9166 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9107
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 9106 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9047
Query 391170 CAACGTTTAATTTT 391183
||||| || || ||
Sbjct 9046 CAACGATTGATATT 9033
>seq273
Length=128786
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 111491 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 111550
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||| | | ||| || |||||||||||||| ||||||||||| |||||
Sbjct 111551 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 111610
Query 391169 ACAACGTTTAATTTT 391183
||| ||| | |||||
Sbjct 111611 ACAGCGTCTGATTTT 111625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975605930377844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |