Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq3935 336 2e-86
seq867 136 3e-26
seq1626 111 1e-18
>seq3935
Length=392680
Score = 336 bits (372), Expect = 2e-86
Identities = 495/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 362078 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 362019
Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 362018 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 361959
Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 361958 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 361899
Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 361898 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 361839
Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 361838 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 361779
Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
| ||| || | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 361778 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 361719
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432
||| |||||| | | || ||| || || || ||| |||| || | ||||||
Sbjct 361718 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTTGGTTTCG 361659
Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492
||| | || |||| ||| |||||||| | ||||||||| || || || ||||
Sbjct 361658 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 361599
Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 361598 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 361539
Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612
|||||| ||| || ||||||||||||| |||| || || || || | |||||| ||
Sbjct 361538 CTTGATTTTTTGCCGCATCTCCAATCAATCGTTCGGTATCGGTGAAAGCAACATAACTTG 361479
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 361478 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 361419
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
| |||||||| | || || || |||||||| |||||||||
Sbjct 361418 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 361378
Score = 109 bits (120), Expect = 4e-18
Identities = 195/282 (69%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 362547 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 362488
Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722
|| ||||||| ||| || || || | || |||||||| |||| || || || || ||
Sbjct 362487 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 362429
Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 362428 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 362369
Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842
||| | | | | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 362368 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 362309
Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884
| | ||||||| |||||| | | ||||| ||||||
Sbjct 362308 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 362267
>seq867
Length=98256
Score = 136 bits (150), Expect = 3e-26
Identities = 316/469 (67%), Gaps = 13/469 (3%)
Strand=Plus/Plus
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 53385 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTACCTGCATCTTTGGTAGCT 53444
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320
|| | ||||| |||||| ||||| || ||||| || | ||||||| | ||||||||
Sbjct 53445 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 53504
Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 53505 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 53564
Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437
|| | | ||| ||| |||| | | | | | || | ||||| | | |
Sbjct 53565 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 53620
Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 53621 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 53680
Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555
|||| ||| | | || |||||||| || | ||||| ||||| | | || | |
Sbjct 53681 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 53739
Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 53740 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 53799
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 518661
| || | ||||| || |||||||| |||||||||||||| ||||||
Sbjct 53800 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATT 53848
>seq1626
Length=71196
Score = 111 bits (122), Expect = 1e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 35415 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 35474
Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446
|||||| | | | || |||||||| |||| ||| || || |||||||||| |||
Sbjct 35475 GTAACTCCTATTCAGCTGTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 35534
Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 35535 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 35578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780601923704758
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |