Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3935 336 2e-86 seq867 136 3e-26 seq1626 111 1e-18 >seq3935 Length=392680 Score = 336 bits (372), Expect = 2e-86 Identities = 495/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 362078 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 362019 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 362018 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 361959 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 361958 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 361899 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 361898 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 361839 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 361838 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 361779 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 361778 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 361719 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| |||||| | | || ||| || || || ||| |||| || | |||||| Sbjct 361718 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTTGGTTTCG 361659 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 ||| | || |||| ||| |||||||| | ||||||||| || || || |||| Sbjct 361658 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 361599 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 361598 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 361539 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 |||||| ||| || ||||||||||||| |||| || || || || | |||||| || Sbjct 361538 CTTGATTTTTTGCCGCATCTCCAATCAATCGTTCGGTATCGGTGAAAGCAACATAACTTG 361479 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 361478 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 361419 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 361418 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 361378 Score = 109 bits (120), Expect = 4e-18 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 362547 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 362488 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 || ||||||| ||| || || || | || |||||||| |||| || || || || || Sbjct 362487 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 362429 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 362428 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 362369 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 362368 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 362309 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | ||||| |||||| Sbjct 362308 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 362267 >seq867 Length=98256 Score = 136 bits (150), Expect = 3e-26 Identities = 316/469 (67%), Gaps = 13/469 (3%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 53385 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTACCTGCATCTTTGGTAGCT 53444 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||||| |||||| ||||| || ||||| || | ||||||| | |||||||| Sbjct 53445 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 53504 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 53505 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 53564 Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || | | ||| ||| |||| | | | | | || | ||||| | | | Sbjct 53565 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 53620 Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496 || || || ||||||||| ||| ||| | ||||| ||| | || | Sbjct 53621 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 53680 Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555 |||| ||| | | || |||||||| || | ||||| ||||| | | || | | Sbjct 53681 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 53739 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612 ||| ||| || || || || |||||| | | || | ||||| | ||||| || | Sbjct 53740 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 53799 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 518661 | || | ||||| || |||||||| |||||||||||||| |||||| Sbjct 53800 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATT 53848 >seq1626 Length=71196 Score = 111 bits (122), Expect = 1e-18 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 35415 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 35474 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 |||||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 35475 GTAACTCCTATTCAGCTGTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 35534 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 35535 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 35578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780601923704758