Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1313 129 7e-25
>seq1313
Length=81678
Score = 129 bits (142), Expect = 7e-25
Identities = 186/267 (70%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545
|| ||||||||| | ||| | || ||||||||| | |||||||||||||| || ||
Sbjct 10040 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 9981
Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605
||| || || || | ||| || | || ||||| | |||| || | || |||||
Sbjct 9980 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAACT 9921
Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665
||| || ||| |||||| || |||||||| ||||| | || | || |||||
Sbjct 9920 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 9861
Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725
| |||||||| ||||| || | ||| ||||||||||| ||||||||
Sbjct 9860 TTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACACCAAT 9801
Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752
||||||||||| |||| ||| |||||
Sbjct 9800 ACCAATTGGTCGATGACGTTTGTTAGA 9774
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
||||| || ||||| ||||| || ||| || | || ||||||||||||| ||| |||
Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
|||| ||||||||| | || || | | |||| |||| ||| |||||||| ||
Sbjct 9145 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 9086
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| ||| ||||| | | || |||||| ||| | ||| |||| ||||||
Sbjct 9085 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 9026
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331
|| || | ||| || || ||||| ||||| |||||
Sbjct 9025 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 8991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562077581882520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |