Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3935 297 2e-74
seq867 134 1e-25
seq3469 104 2e-16
seq3275 104 2e-16
seq1247 100 2e-15
seq1801 93.3 3e-13
seq252 91.5 1e-12
seq4148 86.0 5e-11
seq273 86.0 5e-11
>seq3935
Length=392680
Score = 297 bits (328), Expect = 2e-74
Identities = 397/548 (72%), Gaps = 8/548 (1%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||||| || || ||||| || || || || ||||||||||| || | || ||||||||
Sbjct 361379 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 361438
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||||||||||||||| |||||||| || | || || ||| ||||||| |||||||
Sbjct 361439 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 361498
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || |||| || |||| ||||| |||||| |||||| | |||||| |||
Sbjct 361499 GATACCGAACGATTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 361558
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| |||||||||| || || | || || | | ||| ||||| | | || ||| |
Sbjct 361559 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 361618
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288
|||||||| |||||||| ||| ||||| | || | |||| ||||| | ||| ||
Sbjct 361619 GATATGAAACATTGGCCATTCAAAATTATCAACG---ATGGATCGAAACCAAAAATTCAA 361675
Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347
| | | | | |||| || |||| |||||||| |||| ||||||| ||
Sbjct 361676 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTT 361734
Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407
| |||| ||||| |||| ||| |||| | | || || |||| |||||| |||||
Sbjct 361735 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 361794
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||||| || ||||||||||| || || || ||||| || || ||||| |||||| ||
Sbjct 361795 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 361854
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
| |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| |||||
Sbjct 361855 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 361914
Query 550528 ACTTGATA 550535
||||||||
Sbjct 361915 ACTTGATA 361922
Score = 87.8 bits (96), Expect = 1e-11
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| || || |||||||| ||||| || || ||||||||||||||||| || |||||||||
Sbjct 362954 GGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAAGTTACTTTTGACATCGATGCC 363013
Query 552567 AATGGAATTTTGAATGTGACTGC 552589
|| || |||||||| || ||||
Sbjct 363014 AACGGCATTTTGAACGTTTCTGC 363036
>seq867
Length=98256
Score = 134 bits (148), Expect = 1e-25
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|| ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | |
Sbjct 53566 CCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATTTG 53507
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||| | |||| || | || || ||||| ||||| || || ||||||||
Sbjct 53506 GGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAACGT 53447
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
|||||||| |||||||| || |||||||| ||||||||| |||| || ||||| |||
Sbjct 53446 CAAGCTACCAAAGATGCAGGTACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAA 53387
Query 550502 CC 550503
||
Sbjct 53386 CC 53385
Score = 105 bits (116), Expect = 5e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491
||||| |||||| |||| ||||| ||| || | | || ||||| ||| ||| |||||
Sbjct 52422 GTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGG 52363
Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551
| || || | || || ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 52362 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 52303
Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
||||||||||| | || || |||||| | || || ||
Sbjct 52302 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 52265
>seq3469
Length=14404
Score = 104 bits (114), Expect = 2e-16
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||||||||| || |||||||| |||||||| || ||||| |
Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || |||||
Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 6107
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 6108 AGTCTTAACGAAAATTTGCAT 6128
Score = 100 bits (110), Expect = 2e-15
Identities = 110/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || |||||||| | | ||||||||| || ||||||||||| ||||| || |||||
Sbjct 6269 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 6328
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
|||||| ||| |||||||||| || ||| ||| | || | ||||| || ||
Sbjct 6329 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 6387
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| |||||||||||
Sbjct 6388 AAGAGTCTTAACAAAAATTTGCAT 6411
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| |
Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || ||| ||| | ||| | ||||| ||||||||
Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGTAAG 6670
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| |||||||||||||||||
Sbjct 6671 GGTCTTAACGAAAATTTGCAT 6691
>seq3275
Length=16498
Score = 104 bits (114), Expect = 2e-16
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||||||||| || |||||||| |||||||| || ||||| |
Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || |||||
Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 8344
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 8343 AGTCTTAACGAAAATTTGCAT 8323
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| |
Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || ||| ||| | ||| | ||||| ||||||||
Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGTAAG 7782
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| |||||||||||||||||
Sbjct 7781 GGTCTTAACGAAAATTTGCAT 7761
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || |||||||| | | ||| ||||| || ||||||||||| ||||| || |||||
Sbjct 8183 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 8124
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
|||||| ||| |||||||||| || ||| ||| | || | ||||| || ||
Sbjct 8123 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 8065
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| |||||||||||
Sbjct 8064 AAGAGTCTTAACAAAAATTTGCAT 8041
>seq1247
Length=83145
Score = 100 bits (110), Expect = 2e-15
Identities = 122/164 (74%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711
||| || || |||||||| |||||||| || || | || ||||||||||||||||
Sbjct 6558 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 6617
Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770
| |||||||| ||||| || ||| ||||||||| | ||| ||| | ||| | | |
Sbjct 6618 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATT-GCAGAAGCATACGATG 6676
Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814
|||| |||| || |||||||| ||| || |||| |||||||
Sbjct 6677 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 6720
>seq1801
Length=261924
Score = 93.3 bits (102), Expect = 3e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599
||||| |||| ||||||| || | |||||||| |||||||| | || | | ||||
Sbjct 202654 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTC 202713
Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659
||||||||||| |||| ||| ||||| | || | ||| | | | ||||
Sbjct 202714 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 202773
Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719
||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | |
Sbjct 202774 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 202833
Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745
|||||||| |||||| |||||||
Sbjct 202834 CAAAATTACAAAGAAGTCATTGATCC 202859
>seq252
Length=132080
Score = 91.5 bits (100), Expect = 1e-12
Identities = 109/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | ||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 9765
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449
||| || || || || || || || || ||| || || | |||||| ||||
Sbjct 9766 CTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 9823
Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475
|||| || || ||||| || ||||||
Sbjct 9824 TAAGTGTCTTCACGAATATCTGCATA 9849
Score = 89.7 bits (98), Expect = 4e-12
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 8740 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8799
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||||| ||||||| || ||| ||| | || | ||||| ||||| |
Sbjct 8800 TTTACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 8858
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||||| || ||||| |||||
Sbjct 8859 TGTTTTCACAAAAATCTGCAT 8879
>seq4148
Length=178549
Score = 86.0 bits (94), Expect = 5e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
||||| ||||| || ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 146034 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 146093
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596
||||| || | |||| | |||| | |||
Sbjct 146094 AATGGTATAGTTCATGTCAGTGCTCGAGAT 146123
>seq273
Length=128786
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | || ||||| ||||||||||| || ||||||||||| || |
Sbjct 111631 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 111572
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||| ||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 111571 TTCACATTCTCAACAGTATCAG-ATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAG 111513
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 111512 GGTCTTAACAAAAATTTGCAT 111492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029061034122070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |