Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq501 91.5 2e-13 >seq501 Length=423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 14175 AAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATA 14234 || |||||||| || || | |||||||||||| ||||||||||||||| || || | | Sbjct 1 AACCCTTCATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGAAGGCACCACTACA 60 Query 14235 GCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCT 14294 ||| |||| || || || || ||||| || | || | || ||| | |||| | || Sbjct 61 GCTGCCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTGTCTGGCAGCTCCATGTCC 120 Query 14295 TGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCC 14354 || | || | || || |||| | ||| || | | || ||||| || || || ||| Sbjct 121 TGGGTGTGGTTTTTCCCATCTCTCTTCCAGGTCAGGGTGATGTCAGCTGGGTAGAAGCCC 180 Query 14355 AAAGCCCAGCACC 14367 | |||||||||| Sbjct 181 AGGGCCCAGCACC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629248251184280