Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq3469 140 3e-28
seq3275 134 1e-26
seq252 125 6e-24
seq273 113 4e-20
>seq3469
Length=14404
Score = 140 bits (154), Expect = 3e-28
Identities = 131/166 (79%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382
|| |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 7511 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 7570
Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442
||| || ||| |||| || ||||| || | ||||||||| ||||| | ||||| ||
Sbjct 7571 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 7630
Query 101443 GGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTA 101488
||| | |||||| ||||||||||||| || ||||| || || ||
Sbjct 7631 GGTCAGAGTTTTGACAAATATCTGCA---TTTCGCGATGAATTCTA 7673
Score = 127 bits (140), Expect = 2e-24
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| |||||||| || ||||| || ||||| ||||| ||||| ||
Sbjct 6262 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 6321
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||
Sbjct 6322 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 6381
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| || |||||
Sbjct 6382 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 6411
Score = 122 bits (134), Expect = 7e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| |
Sbjct 7181 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 7240
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||||||| |||| | || || |||| || |||||||| || | |||||| || |
Sbjct 7241 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 7300
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| ||||||||||||||
Sbjct 7301 TCAACGTTTTCACAAATATCTGCAT 7325
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||||||| || ||||| || ||||| || |||||||| || |||||
Sbjct 5987 TACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC 6046
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 6047 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 6106
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 6107 GAGTCTTAACGAAAATTTGCAT 6128
>seq3275
Length=16498
Score = 134 bits (148), Expect = 1e-26
Identities = 118/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382
|| |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 6941 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 6882
Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442
||| || ||| |||| | |||||||| | ||||||||| ||||| | ||||| ||
Sbjct 6881 TTTACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 6822
Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||||| ||||||||||||||
Sbjct 6821 AGTCAGAGTTTTCACAAATATCTGCAT 6795
Score = 131 bits (144), Expect = 1e-25
Identities = 119/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 8190 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 8131
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||
Sbjct 8130 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 8071
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| || |||||
Sbjct 8070 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 8041
Score = 122 bits (134), Expect = 7e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| |
Sbjct 7271 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 7212
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||||||| |||| | || || |||| || |||||||| || | |||||| || |
Sbjct 7211 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 7152
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| ||||||||||||||
Sbjct 7151 TCAACGTTTTCACAAATATCTGCAT 7127
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||||||| || ||||| || ||||| || |||||||| || |||||
Sbjct 8464 TACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC 8405
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 8404 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 8345
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 8344 GAGTCTTAACGAAAATTTGCAT 8323
>seq252
Length=132080
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 8738 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 8797
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| |||| | || ||||| | || ||||| | |||| ||||| || ||||
Sbjct 8798 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 8857
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 8858 ATGTTTTCACAAAAATCTGCAT 8879
Score = 118 bits (130), Expect = 8e-22
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| |||| | || || || | || ||||| | |||| ||||| || |||
Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||| ||||||||
Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| || || | || ||||| || ||||||||||| ||||| ||||||||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 9765
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || ||
Sbjct 9766 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 9825
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || |||||||||||
Sbjct 9826 AGTGTCTTCACGAATATCTGCAT 9848
>seq273
Length=128786
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| |||||||||||| || ||||| || || ||||||||||| ||
Sbjct 111633 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 111574
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || ||||| ||||| | ||||||||| | |||| ||||| || ||||
Sbjct 111573 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 111514
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|| || ||||| || |||||
Sbjct 111513 GGGTCTTAACAAAAATTTGCAT 111492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396256941896151
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |