Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3469 96.9 3e-15 seq3275 96.9 3e-15 seq3221 93.3 3e-14 seq252 82.4 6e-11 >seq3469 Length=14404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| || || ||||||||||| | || | ||| || ||||| ||||| Sbjct 7181 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 7240 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 7241 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 7300 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 7301 TCAACGTTTTCACAAATATCTGCATC 7326 >seq3275 Length=16498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| || || ||||||||||| | || | ||| || ||||| ||||| Sbjct 7271 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 7212 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 7211 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 7152 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 7151 TCAACGTTTTCACAAATATCTGCATC 7126 >seq3221 Length=395314 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 |||| |||||||||| | ||||||||| | || || |||||| ||| ||| ||| Sbjct 168496 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 168555 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 | | |||||| | | ||||| || || ||||||||||| |||| | || || || Sbjct 168556 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 168615 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254 || | ||||||| |||||| | || | ||||| || || || || ||||| ||||| Sbjct 168616 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 168675 Query 9255 TCCCACCGG 9263 || || || Sbjct 168676 GCCGACAGG 168684 >seq252 Length=132080 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| |||||||||| ||| || ||||| | |||| ||| ||||| || ||| || Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | ||||| | ||| || |||| || || |||||||| || Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||||||||||||| Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380916972586089