Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq3469 96.9 3e-15
seq3275 96.9 3e-15
seq3221 93.3 3e-14
seq252 82.4 6e-11
>seq3469
Length=14404
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 7181 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 7240
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 7241 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 7300
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 7301 TCAACGTTTTCACAAATATCTGCATC 7326
>seq3275
Length=16498
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 7271 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 7212
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 7211 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 7152
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 7151 TCAACGTTTTCACAAATATCTGCATC 7126
>seq3221
Length=395314
Score = 93.3 bits (102), Expect = 3e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134
|||| |||||||||| | ||||||||| | || || |||||| ||| ||| |||
Sbjct 168496 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 168555
Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194
| | |||||| | | ||||| || || ||||||||||| |||| | || || ||
Sbjct 168556 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 168615
Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254
|| | ||||||| |||||| | || | ||||| || || || || ||||| |||||
Sbjct 168616 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 168675
Query 9255 TCCCACCGG 9263
|| || ||
Sbjct 168676 GCCGACAGG 168684
>seq252
Length=132080
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
||||| |||||||||| ||| || ||||| | |||| ||| ||||| || ||| ||
Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
||| ||| | | | ||||| | ||| || |||| || || |||||||| ||
Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| ||||||||||||||
Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380916972586089
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |