Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq252 118 2e-21 seq3469 109 8e-19 seq3275 109 8e-19 >seq252 Length=132080 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 8880 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 8821 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || || Sbjct 8820 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 8761 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 8760 GCAACGATTGATATTTGCTGGTA 8738 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 9166 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9107 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 9106 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9047 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 9046 CAACGATTGATATTTGCTGGTAA 9024 Score = 105 bits (116), Expect = 1e-17 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 ||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| || Sbjct 9862 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 9804 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| || || | || ||| || |||| |||||| || ||||| |||||| Sbjct 9803 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 9744 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965 || ||||| || || |||||||| || | ||| ||||| Sbjct 9743 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 9706 >seq3469 Length=14404 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 6692 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 6633 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || || Sbjct 6632 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 6573 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||| ||||| Sbjct 6572 ACAACGTTTGATTTTTGCTGGTGAGCAG 6545 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 7325 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7266 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 7265 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7206 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 7205 CAGCGGCTTATTTTTGCTGGTATGC 7181 >seq3275 Length=16498 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 7760 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7819 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || || Sbjct 7820 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 7879 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||| ||||| Sbjct 7880 ACAACGTTTGATTTTTGCTGGTGAGCAG 7907 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 7127 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7186 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 7187 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7246 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 7247 CAGCGGCTTATTTTTGCTGGTATGC 7271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731831353658800