Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq252 127 4e-24
seq3469 116 7e-21
seq3275 116 7e-21
>seq252
Length=132080
Score = 127 bits (140), Expect = 4e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || ||||||||||| || ||||| |||||||| ||||||
Sbjct 8738 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 8797
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | ||| || | |||||||| | || || ||||| |||||||
Sbjct 8798 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 8857
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
||||||| | ||| |||||||||
Sbjct 8858 ATGTTTTCACAAAAATCTGCATT 8880
Score = 127 bits (140), Expect = 4e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || |||| || ||||||||||| || ||||| |||||||| ||||||
Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|||| ||||| || | |||||| | |||||||| | || || ||||| ||||||
Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
|||||||| | ||| ||||||||
Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| |||||||||||||| || |||||||| || || ||||| ||||| || ||||||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 9765
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|||| ||||| || | ||||| | ||| |||||||| || || ||||| |||||
Sbjct 9766 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 9825
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
| ||| || | |||||||||||
Sbjct 9826 AGTGTCTTCACGAATATCTGCAT 9848
>seq3469
Length=14404
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| ||||| || |||||||| ||||| || ||
Sbjct 7184 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 7243
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | |||||||| || ||||| || ||||| ||||| || || |
Sbjct 7244 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 7303
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 7304 ACGTTTTCACAAATATCTGCAT 7325
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | |||||||| ||||| ||||| |||||||| || ||||||
Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| | | ||||| | ||| ||||| |||||||||||||| || ||
Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634
Query 192514 AATGTTTTAATAAATATCTGCATTT 192538
| ||||| | ||||||||||||||
Sbjct 7635 AGAGTTTTGACAAATATCTGCATTT 7659
Score = 105 bits (116), Expect = 1e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| ||||||||||| || || | || ||||| ||||| |||||||| ||||| ||
Sbjct 6262 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 6321
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
|||||| ||||||||| ||| | ||| || | ||||||||| | || || |||||
Sbjct 6322 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 6381
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || | || |||| ||| || ||||||
Sbjct 6382 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 6412
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || || | || ||||| ||||| ||||| |||||||| ||||||||
Sbjct 5987 TACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC 6046
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| || || |
Sbjct 6047 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 6106
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| || || ||||||
Sbjct 6107 GAGTCTTAACGAAAATTTGCATT 6129
>seq3275
Length=16498
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| ||||| || |||||||| ||||| || ||
Sbjct 7268 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 7209
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | |||||||| || ||||| || ||||| ||||| || || |
Sbjct 7208 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 7149
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 7148 ACGTTTTCACAAATATCTGCAT 7127
Score = 114 bits (126), Expect = 3e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | |||||||| ||||| ||||| |||||||| || ||||||
Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| || | || || | ||| ||||| |||||||||||||| |||||
Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818
Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539
| ||||| | |||||||||||||||
Sbjct 6817 AGAGTTTTCACAAATATCTGCATTTT 6792
Score = 111 bits (122), Expect = 3e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| ||
Sbjct 8190 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 8131
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
|||||| ||||||||| ||| | ||| || | ||||||||| | || || |||||
Sbjct 8130 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 8071
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || | || |||| ||| || ||||||
Sbjct 8070 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 8040
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || || | || ||||| ||||| ||||| |||||||| ||||||||
Sbjct 8464 TACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC 8405
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| || || |
Sbjct 8404 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 8345
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| || || ||||||
Sbjct 8344 GAGTCTTAACGAAAATTTGCATT 8322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984423957553050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |