Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4000 86.0 2e-11 >seq4000 Length=192761 Score = 86.0 bits (94), Expect = 2e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 252559 TACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTG 252618 || ||||| | |||||||||||||||||| ||||||||||||||| ||| |||||| Sbjct 115569 TAAATACCCATAGCCTGCTTTCCCATAGCAGACTGGTAAGTATTTCTTGGACTTTGATTG 115510 Query 252619 TTTTCCGGGAAAGGAATGCATGATGCTACA-ACACCGAAGATAGTGCTTGGGTGAATTTC 252677 | ||||| || ||||| || | ||| || || || || |||| || ||||| || Sbjct 115509 TGATCCGGAAATGGAAT-AATACTCGCACACACGCCCAAAATCATGCTCGGATGAATCTC 115451 Query 252678 ACAGTG 252683 |||||| Sbjct 115450 ACAGTG 115445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471733815403291