Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3469 114 1e-20
seq3275 105 6e-18
seq1313 87.8 2e-12
>seq3469
Length=14404
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || ||||| ||||| ||||| || ||||| ||| || |
Sbjct 7657 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 7598
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||||| |||| || || || || || || ||||| ||||| || |||||||||
Sbjct 7597 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 7538
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 7537 CAACGTCTGATTTTTGCTGGTAA 7515
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 6411 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 6352
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || || |||||||| || || |||||
Sbjct 6351 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 6292
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 6291 CAACGTTTGATTTTTGCTGGTAA 6269
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | |
Sbjct 7326 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 7267
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| | |||| |||||| ||||| |||||||||||||| || || || |||||
Sbjct 7266 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 7207
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || | || ||||| ||
Sbjct 7206 ACAGCGGCTTATTTTTGCTGG 7186
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 6128 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 6069
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || ||||| ||||| || || |||||
Sbjct 6068 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 6009
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 6008 CAACGTTTGATTTTTGCTGG 5989
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | |
Sbjct 6691 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 6632
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || || || |||||||| || || ||||||
Sbjct 6631 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 6572
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 6571 CAACGTTTGATTTTTGCTGG 6552
>seq3275
Length=16498
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || |
Sbjct 6795 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 6854
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || || || || || ||||| ||||| || |||||||||
Sbjct 6855 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 6914
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 6915 CAACGTCTGATTTTTGCTGGTAA 6937
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 8041 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 8100
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || || |||||||| || || ||||||
Sbjct 8101 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 8160
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 8161 CAACGTTTGATTTTTGCTGGTAA 8183
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | |
Sbjct 7126 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 7185
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| | |||| |||||| ||||| |||||||||||||| || || || |||||
Sbjct 7186 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 7245
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || | || ||||| ||
Sbjct 7246 ACAGCGGCTTATTTTTGCTGG 7266
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 8323 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 8382
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || ||||| ||||| || || |||||
Sbjct 8383 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 8442
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 8443 CAACGTTTGATTTTTGCTGG 8462
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | |
Sbjct 7761 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 7820
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || || || |||||||| || || ||||||
Sbjct 7821 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 7880
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 7881 CAACGTTTGATTTTTGCTGG 7900
>seq1313
Length=81678
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182
|||| |||||||| | |||| || ||| || || ||||| | |||||| |||||
Sbjct 9457 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 9398
Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242
||||| || || ||||||||||| | |||| |||||||||| ||||| | ||| | |
Sbjct 9397 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 9338
Query 139243 TCTATAAT 139250
|| |||||
Sbjct 9337 TCAATAAT 9330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449872613812040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |